Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G118000.1 | Wheat | nucleus, peroxisome, plastid | 74.63 | 75.0 |
| TraesCS3B01G135200.1 | Wheat | nucleus, peroxisome, plastid | 73.63 | 74.0 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 72.14 | 72.14 |
| Zm00001d009130_P001 | Maize | nucleus | 68.66 | 64.49 |
| KXG32361 | Sorghum | mitochondrion | 68.66 | 63.01 |
| HORVU7Hr1G098080.1 | Barley | nucleus | 59.7 | 60.91 |
| HORVU3Hr1G021110.1 | Barley | nucleus | 59.7 | 60.91 |
| Os01t0299700-01 | Rice | cytosol, peroxisome | 61.69 | 52.32 |
| Os01t0660800-01 | Rice | nucleus | 44.28 | 44.72 |
| PGSC0003DMT400087534 | Potato | cytosol, nucleus, plastid | 34.83 | 44.3 |
| VIT_14s0060g01000.t01 | Wine grape | nucleus | 34.33 | 44.23 |
| PGSC0003DMT400016348 | Potato | nucleus | 45.27 | 43.54 |
| PGSC0003DMT400092627 | Potato | nucleus | 43.78 | 42.72 |
| Solyc01g100680.1.1 | Tomato | plastid | 41.79 | 41.58 |
| VIT_14s0060g00990.t01 | Wine grape | nucleus | 42.79 | 40.95 |
| Solyc01g100670.1.1 | Tomato | cytosol | 33.33 | 40.85 |
| Solyc04g076930.1.1 | Tomato | cytosol, nucleus, plastid | 25.87 | 40.0 |
| Os04t0225100-01 | Rice | cytosol | 37.81 | 36.02 |
| Os01t0737600-00 | Rice | cytosol | 36.32 | 35.1 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 22.89 | 34.07 |
| KRH26003 | Soybean | nucleus | 34.83 | 33.65 |
| Os07t0112300-00 | Rice | mitochondrion | 18.91 | 32.76 |
| Os01t0737700-00 | Rice | nucleus | 36.32 | 31.2 |
| KRH63674 | Soybean | cytosol | 22.89 | 27.88 |
| Os01t0660500-00 | Rice | mitochondrion | 41.79 | 21.48 |
| Os04t0129200-00 | Rice | nucleus | 28.36 | 19.13 |
| Os07t0112400-00 | Rice | mitochondrion | 29.85 | 12.1 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:4325776 | EMBL:AK063585 | ProteinID:BAB60933.1 |
| ProteinID:BAB67862.1 | ProteinID:BAF04730.1 | ProteinID:BAS71709.1 | ProteinID:EAZ11566.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | EnsemblPlantsGene:Os01g0300000 | EnsemblPlants:Os01t0300000-01 |
| PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 | UniProt:Q93VU9 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SUPFAM:SSF53098 | UniParc:UPI00000A9DAA | RefSeq:XP_015644590.1 | SEG:seg | : | : |
Description
3'-5' exonuclease domain containing protein. (Os01t0300000-01)
Coordinates
chr1:-:10990819..10991617
Molecular Weight (calculated)
21900.5 Da
IEP (calculated)
8.107
GRAVY (calculated)
-0.032
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMTTTRHTV RFGSATIDTT VTSDVAAADE WARGVRAAAR GGRGLIVGLD CEWKPNHVSW KTSKVAVLQL CAGERFCLVL QLFYANRVPP AVADLLGDPS
101: VRLVGIGVGE DAAKLEADYG VWCAAPVDLE DACNRRLGLV GTGRRLGLKG YAREVLGMAM EKPRRVTMSN WEKRELDPAQ VEYACIDAYV SYKLGERVLA
201: N
101: VRLVGIGVGE DAAKLEADYG VWCAAPVDLE DACNRRLGLV GTGRRLGLKG YAREVLGMAM EKPRRVTMSN WEKRELDPAQ VEYACIDAYV SYKLGERVLA
201: N
001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS
Arabidopsis Description
WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.