Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400087534 | Potato | cytosol, nucleus, plastid | 66.34 | 84.81 |
| Solyc01g100670.1.1 | Tomato | cytosol | 62.87 | 77.44 |
| Solyc04g076930.1.1 | Tomato | cytosol, nucleus, plastid | 37.13 | 57.69 |
| KRH26003 | Soybean | nucleus | 47.52 | 46.15 |
| Zm00001d009130_P001 | Maize | nucleus | 44.55 | 42.06 |
| KRH63674 | Soybean | cytosol | 34.16 | 41.82 |
| Os01t0300000-01 | Rice | nucleus | 41.58 | 41.79 |
| KXG32361 | Sorghum | mitochondrion | 44.55 | 41.1 |
| TraesCS3B01G135200.1 | Wheat | nucleus, peroxisome, plastid | 40.59 | 41.0 |
| TraesCS3D01G118000.1 | Wheat | nucleus, peroxisome, plastid | 40.1 | 40.5 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 39.11 | 39.3 |
| Solyc10g078200.1.1 | Tomato | nucleus | 38.61 | 38.05 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 37.62 | 36.72 |
| Solyc12g042390.1.1 | Tomato | cytosol | 36.63 | 34.1 |
| HORVU7Hr1G098080.1 | Barley | nucleus | 32.67 | 33.5 |
| HORVU3Hr1G021110.1 | Barley | nucleus | 32.67 | 33.5 |
| Solyc01g103460.2.1 | Tomato | cytosol | 34.16 | 32.39 |
| Solyc11g006480.1.1 | Tomato | nucleus | 27.72 | 31.64 |
| Solyc08g007350.1.1 | Tomato | cytosol | 35.64 | 30.64 |
| Solyc12g094540.1.1 | Tomato | cytosol | 30.69 | 30.39 |
| Os01t0299700-01 | Rice | cytosol, peroxisome | 34.65 | 29.54 |
| Solyc09g092340.2.1 | Tomato | nucleus | 28.22 | 19.0 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | UniProt:K4B199 | PFAM:PF01612 | PANTHER:PTHR13620 |
| PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | EnsemblPlantsGene:Solyc01g100680.1 |
| EnsemblPlants:Solyc01g100680.1.1 | UniParc:UPI00027676DE | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1:+:90657505..90658113
Molecular Weight (calculated)
22441.7 Da
IEP (calculated)
7.333
GRAVY (calculated)
-0.191
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSSYGSSSS GTTSKYNVKF GGQTIETTVT NKAAVANEWA NAMLSKYSGR QKVVGLDSEW KPTFSNKSAT LQLCIANTCL IVQLFYLDEI PQSLKKFLAN
101: PNFVFVGVEV AEDILKLKNE YGLVCNSHED IRDVAMNKWP GRFSRPGLKD LASAISGLYM TKPDHVCQSN WEASVLSEAQ VEYACIDAYA SYKIGHKLLM
201: EY
101: PNFVFVGVEV AEDILKLKNE YGLVCNSHED IRDVAMNKWP GRFSRPGLKD LASAISGLYM TKPDHVCQSN WEASVLSEAQ VEYACIDAYA SYKIGHKLLM
201: EY
001: MSSSIVKIGI DSIKTTVTEK ERDINRLVKT FLSNKNNRKK IIGLDTERVQ KGRKLNKTVL LQLCDGDNCL IVQLPDEDED EGEGEDDNLP LPLFNFLNLP
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9LK79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.