Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016348 | Potato | nucleus | 88.46 | 55.02 |
| VIT_14s0060g00990.t01 | Wine grape | nucleus | 73.08 | 45.24 |
| VIT_14s0060g01000.t01 | Wine grape | nucleus | 49.23 | 41.03 |
| Solyc01g100680.1.1 | Tomato | plastid | 57.69 | 37.13 |
| KRH63674 | Soybean | cytosol | 43.85 | 34.55 |
| Solyc01g100670.1.1 | Tomato | cytosol | 43.08 | 34.15 |
| KRH26003 | Soybean | nucleus | 46.15 | 28.85 |
| Os01t0300000-01 | Rice | nucleus | 40.0 | 25.87 |
| KXG32361 | Sorghum | mitochondrion | 42.31 | 25.11 |
| Solyc10g078200.1.1 | Tomato | nucleus | 38.46 | 24.39 |
| Solyc12g094540.1.1 | Tomato | cytosol | 37.69 | 24.02 |
| Solyc12g042390.1.1 | Tomato | cytosol | 40.0 | 23.96 |
| Zm00001d009130_P001 | Maize | nucleus | 39.23 | 23.83 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 37.69 | 23.67 |
| TraesCS3B01G135200.1 | Wheat | nucleus, peroxisome, plastid | 36.15 | 23.5 |
| TraesCS3D01G118000.1 | Wheat | nucleus, peroxisome, plastid | 36.15 | 23.5 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 35.38 | 22.89 |
| Solyc01g103460.2.1 | Tomato | cytosol | 36.15 | 22.07 |
| Solyc11g006480.1.1 | Tomato | nucleus | 28.46 | 20.9 |
| Solyc08g007350.1.1 | Tomato | cytosol | 34.62 | 19.15 |
| HORVU3Hr1G021110.1 | Barley | nucleus | 28.46 | 18.78 |
| HORVU7Hr1G098080.1 | Barley | nucleus | 28.46 | 18.78 |
| Os01t0299700-01 | Rice | cytosol, peroxisome | 33.85 | 18.57 |
| Solyc09g092340.2.1 | Tomato | nucleus | 22.31 | 9.67 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | UniProt:K4BUD0 | PFAM:PF01612 | PANTHER:PTHR13620 |
| PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SUPFAM:SSF53098 | EnsemblPlantsGene:Solyc04g076930.1 | EnsemblPlants:Solyc04g076930.1.1 |
| UniParc:UPI000276605B | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:61872511..61872951
Molecular Weight (calculated)
14633.5 Da
IEP (calculated)
5.189
GRAVY (calculated)
-0.162
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSFTNRNGI TYNPTTSKHS VTFAGKTIET TVTDKGTVMV VVGLDIEWRP HESWMSNKSA TLQLCIDEKC LILQLLYLDE VPESLKDFLN SSKFTFVGIE
101: VADDVKKLKN EYGLNCAKSA DIRAMAWEVS
101: VADDVKKLKN EYGLNCAKSA DIRAMAWEVS
001: MSSSIVKIGI DSIKTTVTEK ERDINRLVKT FLSNKNNRKK IIGLDTERVQ KGRKLNKTVL LQLCDGDNCL IVQLPDEDED EGEGEDDNLP LPLFNFLNLP
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9LK79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.