Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0060g00990.t01 | Wine grape | nucleus | 85.9 | 63.81 |
| PGSC0003DMT400016348 | Potato | nucleus | 74.36 | 55.5 |
| Solyc04g076930.1.1 | Tomato | cytosol, nucleus, plastid | 41.03 | 49.23 |
| KRH26003 | Soybean | nucleus | 53.21 | 39.9 |
| KRH63674 | Soybean | cytosol | 39.74 | 37.58 |
| Os01t0300000-01 | Rice | nucleus | 44.23 | 34.33 |
| HORVU3Hr1G021110.1 | Barley | nucleus | 42.95 | 34.01 |
| HORVU7Hr1G098080.1 | Barley | nucleus | 42.95 | 34.01 |
| TraesCS3B01G135200.1 | Wheat | nucleus, peroxisome, plastid | 43.59 | 34.0 |
| TraesCS3D01G118000.1 | Wheat | nucleus, peroxisome, plastid | 43.59 | 34.0 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 42.95 | 33.33 |
| Zm00001d009130_P001 | Maize | nucleus | 45.51 | 33.18 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 44.23 | 33.17 |
| KXG32361 | Sorghum | mitochondrion | 46.15 | 32.88 |
| Os01t0299700-01 | Rice | cytosol, peroxisome | 35.9 | 23.63 |
| VIT_05s0029g00410.t01 | Wine grape | nucleus | 25.0 | 12.96 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | ProteinID:CCB61923 | ProteinID:CCB61923.1 | UniProt:F6I4T6 |
| EMBL:FN596746 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 |
| InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SUPFAM:SSF53098 | UniParc:UPI000210A8A1 | ArrayExpress:VIT_14s0060g01000 | EnsemblPlantsGene:VIT_14s0060g01000 | EnsemblPlants:VIT_14s0060g01000.t01 | RefSeq:XP_002277541 |
| RefSeq:XP_002277541.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:759013..759633
Molecular Weight (calculated)
18048.1 Da
IEP (calculated)
8.359
GRAVY (calculated)
-0.165
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVGLDIEWR PNRIPSMSNK SATLQLCINN KCLILQLFYM DEIPQSLKGF LLDSNFTFVG VEVGADIDKL KNEYGLECSC SADVRILAMQ RWPGRFRRPG
101: LKDLAWEVVN LRMKKPKHVC MSNWEARVLN ENQVEYACID AYASYRIGHK LIIEKY
101: LKDLAWEVVN LRMKKPKHVC MSNWEARVLN ENQVEYACID AYASYRIGHK LIIEKY
001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
Arabidopsis Description
WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.