Factsheet for VIT_05s0029g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31568	Soybean	mitochondrion	36.21	53.69
CDY01171	Canola	nucleus	42.52	46.55
CDY50420	Canola	nucleus	42.52	46.55
KRG97350	Soybean	nucleus	44.52	45.89
Bra032748.1-P	Field mustard	nucleus	42.19	45.85
Solyc09g092340.2.1	Tomato	nucleus	45.51	45.67
PGSC0003DMT400053073	Potato	nucleus	45.51	45.51
AT4G13870.2	Thale cress	nucleus	43.19	45.14
HORVU2Hr1G001690.1	Barley	plastid	33.55	43.35
TraesCS2A01G011600.1	Wheat	nucleus	37.87	38.51
TraesCS2B01G010000.1	Wheat	nucleus	37.54	38.31
Os04t0129200-00	Rice	nucleus	37.87	38.26
Zm00001d004468_P003	Maize	nucleus	37.87	37.62
TraesCS2D01G012000.1	Wheat	nucleus	37.21	37.58
EES11779	Sorghum	nucleus	36.54	35.37
GSMUA_AchrUn_...	Banana	nucleus	29.9	31.36
VIT_08s0040g00710.t01	Wine grape	cytosol	17.28	25.0
VIT_14s0060g01000.t01	Wine grape	nucleus	12.96	25.0
AT4G13885.1	Thale cress	nucleus	20.93	23.95
VIT_14s0060g00990.t01	Wine grape	nucleus	14.62	20.95

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	ProteinID:CBI17293	ProteinID:CBI17293.3	UniProt:D7SNR4
EMBL:FN594958	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF19	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI0001BE10C9	ArrayExpress:VIT_05s0029g00410	EnsemblPlantsGene:VIT_05s0029g00410
EnsemblPlants:VIT_05s0029g00410.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:15069723..15086324

Molecular Weight (calculated)

33568.7 Da

IEP (calculated)

7.503

GRAVY (calculated)

-0.510

Length

301 amino acids

Sequence
(BLAST)

001: METSDHPSSS SPSPSIFSVP EWDWDQPMTQ QQLEELDAIE SAFRSQTSSS TPTSQEADDR RKIRRRLPNS IGSNRCPSAF KGRDLNSFSL SPCPTNRFLN
101: LFHSPCQENF KMRLPKINFG GHIVYSRTVT EVEKATAELL KIVETKKKEL GQAILGFDIE WRPTFRKGVS QGKAADPTSI KVGVGIANDA VKVFKDHSVS
201: VKDLEDLSYL ANQKLGGDAK KWGLGSLTEM LISKQLLKPN KIRLGNWEAD VLSKAQLEYA ATDAFASWYL YEVLKSFPDT AENKIEELEG KGLNPTIVIT
301: P

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.