Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G13870.2 | Thale cress | nucleus | 37.64 | 34.38 |
| CDY01171 | Canola | nucleus | 35.74 | 34.18 |
| Bra032748.1-P | Field mustard | nucleus | 35.74 | 33.94 |
| CDY50420 | Canola | nucleus | 34.6 | 33.09 |
| HORVU2Hr1G001690.1 | Barley | plastid | 22.81 | 25.75 |
| KRH31568 | Soybean | mitochondrion | 19.77 | 25.62 |
| KRG97350 | Soybean | nucleus | 27.38 | 24.66 |
| Os04t0129200-00 | Rice | nucleus | 27.0 | 23.83 |
| TraesCS2B01G010000.1 | Wheat | nucleus | 25.48 | 22.71 |
| TraesCS2A01G011600.1 | Wheat | nucleus | 25.48 | 22.64 |
| TraesCS2D01G012000.1 | Wheat | nucleus | 25.48 | 22.48 |
| PGSC0003DMT400053073 | Potato | nucleus | 25.48 | 22.26 |
| Zm00001d004468_P003 | Maize | nucleus | 24.71 | 21.45 |
| Solyc09g092340.2.1 | Tomato | nucleus | 23.95 | 21.0 |
| VIT_05s0029g00410.t01 | Wine grape | nucleus | 23.95 | 20.93 |
| EES11779 | Sorghum | nucleus | 24.71 | 20.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.59 | 14.29 |
| AT2G36110.1 | Thale cress | mitochondrion | 11.41 | 12.55 |
| AT3G12470.1 | Thale cress | mitochondrion | 10.27 | 12.27 |
| AT3G12460.1 | Thale cress | cytosol, nucleus, plastid | 10.65 | 11.57 |
| AT3G12430.1 | Thale cress | cytosol, nucleus, plastid | 10.27 | 11.34 |
| AT3G12410.1 | Thale cress | plastid | 9.51 | 10.87 |
| AT3G12420.1 | Thale cress | cytosol | 7.22 | 10.27 |
| AT3G12440.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 9.13 | 6.8 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:827023 | ProteinID:AEE83341.1 | ArrayExpress:AT4G13885 |
| EnsemblPlantsGene:AT4G13885 | RefSeq:AT4G13885 | TAIR:AT4G13885 | RefSeq:AT4G13885-TAIR-G | EnsemblPlants:AT4G13885.1 | TAIR:AT4G13885.1 |
| UniProt:F4JTU8 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | RefSeq:NP_680682.1 | PFAM:PF01612 | PANTHER:PTHR13620 |
| PANTHER:PTHR13620:SF19 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SUPFAM:SSF53098 | UniParc:UPI0000162A2E | : |
Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JTU8]
Coordinates
chr4:-:8028911..8030754
Molecular Weight (calculated)
29950.4 Da
IEP (calculated)
6.975
GRAVY (calculated)
0.005
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTTEELKIS HYKLYKCFDF LVVANNKIEV AQAFVKYRRP EYFLPLVGVE FVSLTLVGKH FKLGKYSVVV LRGEVHSETL RCLLPKLTDQ PIGSSFLLLR
101: PFRDVGNYCL LLHILPSSKK FTLAMQFLCE LIDSTSKEEE DVFRVLVYAS DELLDVKTYR ALIGCSWELF RCSPGEGCNC PDMCRLQHLI EDSTLVKVGI
201: GIDGDSVKLF HDYGLLKPNR IRLGNWEVHP LSKQQLQYAA TDAYASWHLH QVLKDLPDAV SGS
101: PFRDVGNYCL LLHILPSSKK FTLAMQFLCE LIDSTSKEEE DVFRVLVYAS DELLDVKTYR ALIGCSWELF RCSPGEGCNC PDMCRLQHLI EDSTLVKVGI
201: GIDGDSVKLF HDYGLLKPNR IRLGNWEVHP LSKQQLQYAA TDAYASWHLH QVLKDLPDAV SGS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.