Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G12430.1 | Thale cress | cytosol, nucleus, plastid | 47.31 | 70.17 |
| AT3G12460.1 | Thale cress | cytosol, nucleus, plastid | 47.03 | 68.59 |
| AT3G12410.1 | Thale cress | plastid | 39.94 | 61.3 |
| Bra038717.1-P | Field mustard | cytosol | 37.39 | 58.93 |
| CDY50548 | Canola | cytosol | 37.39 | 58.93 |
| AT3G12420.1 | Thale cress | cytosol | 28.9 | 55.14 |
| AT3G12470.1 | Thale cress | mitochondrion | 34.28 | 55.0 |
| CDY71159 | Canola | cytosol | 35.98 | 49.61 |
| AT2G36110.1 | Thale cress | mitochondrion | 32.58 | 48.12 |
| KRH36952 | Soybean | cytosol | 24.36 | 41.75 |
| KRH11911 | Soybean | nucleus | 24.93 | 38.6 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 18.98 | 33.67 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 18.41 | 32.66 |
| Os07t0112300-00 | Rice | mitochondrion | 9.92 | 30.17 |
| EES02313 | Sorghum | mitochondrion, plastid | 18.98 | 27.69 |
| Zm00001d018645_P001 | Maize | mitochondrion | 19.26 | 25.09 |
| OQU88309 | Sorghum | mitochondrion | 16.15 | 23.36 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 12.46 | 23.16 |
| AT4G13870.2 | Thale cress | nucleus | 12.75 | 15.62 |
| Os07t0112400-00 | Rice | mitochondrion | 20.11 | 14.31 |
| EER95744 | Sorghum | nucleus | 18.7 | 13.55 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 19.83 | 11.95 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 18.7 | 11.48 |
| AT4G13885.1 | Thale cress | nucleus | 6.8 | 9.13 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | EntrezGene:820423 | ProteinID:AAG51010.1 | ProteinID:AEE75197.1 |
| ArrayExpress:AT3G12440 | EnsemblPlantsGene:AT3G12440 | RefSeq:AT3G12440 | TAIR:AT3G12440 | RefSeq:AT3G12440-TAIR-G | EnsemblPlants:AT3G12440.1 |
| TAIR:AT3G12440.1 | Unigene:At.65083 | ProteinID:BAB03151.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | RefSeq:NP_187850.1 | PO:PO:0000037 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009046 | PO:PO:0020094 | PO:PO:0025022 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF8 | UniProt:Q9LHG4 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI00000A0C75 | : |
Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG4]
Coordinates
chr3:-:3951108..3952260
Molecular Weight (calculated)
39722.0 Da
IEP (calculated)
10.001
GRAVY (calculated)
-0.417
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRIRSIGS YATQGKFSVD FFGDEFIVTV TSDPSVIGQW IHDVLRFSSR PLVVGVGVQW TPHPTSPPAR YHSPVSYHSD SSPVTHHYDS PPVCYRSDSP
101: PAQYCSVSPP ARYSSDSPPA QYRSVSPPAQ YRSVSPPALY RSVSPPARYR SVSPPVRYRS DSPPAQFRSV SPPARYLSDS PLVRYRSVSP PARYLSVSPP
201: ARYRSVSPPA RSDPPANTLQ LCVGNRCIII QLFYCNRVPH VLRRFLGDRN HTFVGFWNSQ DAGKLKRSRH RLEIAELLDL RNHVVDSRGR GLKGRSFEVV
301: VGECLGYRGV RLEKAIGMSD WSVYDLSYDQ ILQASIDVYV CSKLGFRNRL WEF
101: PAQYCSVSPP ARYSSDSPPA QYRSVSPPAQ YRSVSPPALY RSVSPPARYR SVSPPVRYRS DSPPAQFRSV SPPARYLSDS PLVRYRSVSP PARYLSVSPP
201: ARYRSVSPPA RSDPPANTLQ LCVGNRCIII QLFYCNRVPH VLRRFLGDRN HTFVGFWNSQ DAGKLKRSRH RLEIAELLDL RNHVVDSRGR GLKGRSFEVV
301: VGECLGYRGV RLEKAIGMSD WSVYDLSYDQ ILQASIDVYV CSKLGFRNRL WEF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.