Factsheet for Bra038717.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50548	Canola	cytosol	98.66	98.66
Bra038723.1-P	Field mustard	cytosol	56.7	57.73
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	60.71	57.14
Bra038722.1-P	Field mustard	cytosol	54.91	56.68
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	58.93	54.55
Bra038721.1-P	Field mustard	plastid	42.86	52.46
AT3G12420.1	Thale cress	cytosol	40.62	49.19
KRH36952	Soybean	cytosol	40.62	44.17
KRH11911	Soybean	nucleus	40.18	39.47
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	58.93	37.39
Os07t0112300-00	Rice	mitochondrion	17.41	33.62
TraesCS1D01G315900.1	Wheat	mitochondrion	28.12	31.66
TraesCS1A01G315700.1	Wheat	mitochondrion	27.68	31.16
EES02313	Sorghum	mitochondrion, plastid	30.36	28.1
Zm00001d018645_P001	Maize	mitochondrion	30.36	25.09
GSMUA_Achr1P12990_001	Banana	plastid	20.54	24.21
OQU88309	Sorghum	mitochondrion	24.11	22.13
Bra032748.1-P	Field mustard	nucleus	19.2	15.52
EER95744	Sorghum	nucleus	32.59	14.99
Os07t0112400-00	Rice	mitochondrion	32.59	14.72
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	33.04	12.63
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	32.14	12.52

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	EnsemblPlantsGene:Bra038717	EnsemblPlants:Bra038717.1	EnsemblPlants:Bra038717.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR036397	UniProt:M4FCA1	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI0002545241	SEG:seg	:	:

Description

AT3G12410 (E=9e-081) | 3'-5' exonuclease/ nucleic acid binding

Coordinates

chrA01:+:26449447..26450121

Molecular Weight (calculated)

25894.4 Da

IEP (calculated)

4.459

GRAVY (calculated)

-0.251

Length

224 amino acids

Sequence
(BLAST)

001: MAPTIRTVAT YNTHQEHTVD FFGNEFTVTV TRSSSVITRW INNVQYYNRY SSHPLVIGVG VQWTPIYLCD NCYYADPYYN ADPEADTLQL CVGTRCLVIQ
101: LSHCDDVPDE LRSFLTDPRT FYVGFWNGQD AGKLARSRHG LEIEELLDLR NYVQDSVGFG MSRCSFEEMV EECMGYRGVR LDRGISMSDW SAYELDHEQI
201: LQASVDAYVC FKLGVLVRLW EYYD

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.