Factsheet for Bra038721.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50339	Canola	plastid	71.04	72.63
CDY50545	Canola	cytosol, nucleus, plastid	80.87	63.79
Bra038723.1-P	Field mustard	cytosol	63.39	52.73
Bra038722.1-P	Field mustard	cytosol	60.66	51.15
Bra038717.1-P	Field mustard	cytosol	52.46	42.86
KRH36952	Soybean	cytosol	37.16	33.01
KRH11911	Soybean	nucleus	37.7	30.26
Os07t0112300-00	Rice	mitochondrion	15.3	24.14
TraesCS1A01G315700.1	Wheat	mitochondrion	22.95	21.11
TraesCS1D01G315900.1	Wheat	mitochondrion	22.95	21.11
EES02313	Sorghum	mitochondrion, plastid	26.23	19.83
GSMUA_Achr1P12990_001	Banana	plastid	19.67	18.95
Zm00001d018645_P001	Maize	mitochondrion	26.23	17.71
OQU88309	Sorghum	mitochondrion	23.5	17.62
EER95744	Sorghum	nucleus	27.87	10.47
Bra032748.1-P	Field mustard	nucleus	15.3	10.11
Os07t0112400-00	Rice	mitochondrion	26.78	9.88
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	27.87	8.87
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	27.87	8.7

Protein Annotations

EnsemblPlants:Bra038721.1	EnsemblPlants:Bra038721.1-P	EnsemblPlantsGene:Bra038721	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8
SEG:seg	SUPFAM:SSF53098	UniParc:UPI000254523D	UniProt:M4FCA5	MapMan:35.2	:

Description

AT3G12410 (E=4e-048) | 3'-5' exonuclease/ nucleic acid binding

Coordinates

chrA01:+:26435624..26436175

Molecular Weight (calculated)

20886.1 Da

IEP (calculated)

9.752

GRAVY (calculated)

-0.321

Length

183 amino acids

Sequence
(BLAST)

001: MNPRCSLPSP SLALESPSRR WSRRPVDTPP SWYFSSPPSH YRPADTLQLC VGTSCLIIQL SYCKRVPDII PRFLTDPNTT FVGIRNSQGA KRLARTRHQL
101: EIGEILDARM YVVDSQGRSL RGRSFEEIVE KCMGFRGVKL DRGISRSDWS VEYLSNDQIL QVSVDAYVCF KLGVSARLWQ VKF

Best Arabidopsis Sequence Match ( AT3G12440.1 )
(BLAST)

001: MAPRIRSIGS YATQGKFSVD FFGDEFIVTV TSDPSVIGQW IHDVLRFSSR PLVVGVGVQW TPHPTSPPAR YHSPVSYHSD SSPVTHHYDS PPVCYRSDSP
101: PAQYCSVSPP ARYSSDSPPA QYRSVSPPAQ YRSVSPPALY RSVSPPARYR SVSPPVRYRS DSPPAQFRSV SPPARYLSDS PLVRYRSVSP PARYLSVSPP
201: ARYRSVSPPA RSDPPANTLQ LCVGNRCIII QLFYCNRVPH VLRRFLGDRN HTFVGFWNSQ DAGKLKRSRH RLEIAELLDL RNHVVDSRGR GLKGRSFEVV
301: VGECLGYRGV RLEKAIGMSD WSVYDLSYDQ ILQASIDVYV CSKLGFRNRL WEF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.