CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0112300-00	Rice	mitochondrion	27.27	56.9
TraesCS1D01G315900.1	Wheat	mitochondrion	46.28	56.28
OQU88309	Sorghum	mitochondrion	54.55	54.1
TraesCS1B01G327900.1	Wheat	mitochondrion	42.15	51.26
TraesCS1A01G315700.1	Wheat	mitochondrion	41.32	50.25
KRH36952	Soybean	cytosol	30.99	36.41
EES03385	Sorghum	cytosol, nucleus, plastid	28.51	34.33
EES03384	Sorghum	nucleus	27.27	32.67
KRH11911	Soybean	nucleus	30.58	32.46
Bra038723.1-P	Field mustard	cytosol	28.51	31.36
CDY50341	Canola	cytosol	28.51	31.36
Bra038722.1-P	Field mustard	cytosol	28.1	31.34
EES01441	Sorghum	cytosol, nucleus, plastid	26.86	30.95
Bra038717.1-P	Field mustard	cytosol	28.1	30.36
EES01443	Sorghum	cytosol	25.21	30.05
CDY50548	Canola	cytosol	27.69	29.91
AT3G12410.1	Thale cress	plastid	28.1	29.57
AT3G12470.1	Thale cress	mitochondrion	26.45	29.09
KXG33324	Sorghum	cytosol	23.55	28.93
EES01442	Sorghum	nucleus	24.38	28.37
CDY50340	Canola	nucleus	19.01	27.88
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	27.27	27.73
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	27.69	27.69
AT2G36110.1	Thale cress	mitochondrion	27.27	27.62
CDY71159	Canola	cytosol	28.93	27.34
KXG32361	Sorghum	mitochondrion	23.97	26.48
Bra038721.1-P	Field mustard	plastid	19.83	26.23
AT3G12420.1	Thale cress	cytosol	19.42	25.41
CDY50545	Canola	cytosol, nucleus, plastid	23.97	25.0
EES03381	Sorghum	nucleus	23.14	24.78
GSMUA_Achr1P12990_001	Banana	plastid	19.42	24.74
OQU87276	Sorghum	nucleus	22.31	23.89
EER95744	Sorghum	nucleus	42.15	20.94
CDY50339	Canola	plastid	14.88	20.11
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	27.69	18.98
EES11779	Sorghum	nucleus	15.7	12.22

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.2	EntrezGene:8084350	UniProt:C5XLX8	EnsemblPlants:EES02313	ProteinID:EES02313
ProteinID:EES02313.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR036397	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	EnsemblPlantsGene:SORBI_3003G033400
SUPFAM:SSF53098	UniParc:UPI0001A84F6D	RefSeq:XP_002457193.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:3062354..3063493

Molecular Weight (calculated)

26327.3 Da

IEP (calculated)

9.239

GRAVY (calculated)

-0.335

Length

242 amino acids

Sequence
(BLAST)

001: MAARGRNSAV PSRTLHVGGY HVVTTVTARP GVVRRWLYTT LWRQRQNLHS AAGLTVGLGV QWTPPFRKLP GGAEPRPGTL QLCSGNRCLI YQIARAGGVV
101: PKILRRFLAD ARITFAVYGV ASDCRKLRAH HGLELGSTLE LQGAAGMGNA SMAEMADRLL GIVRGGVEKS RRISTSTWDG PRLSRGQVRY ACVDAFLSRC
201: LGEHIRRDMA SDDEYESDPD DGSDSTAGEE WESDAVDGGY WG

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.