Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G12410.1 | Thale cress | plastid | 56.22 | 45.22 |
| AT3G12460.1 | Thale cress | cytosol, nucleus, plastid | 54.59 | 41.74 |
| AT3G12430.1 | Thale cress | cytosol, nucleus, plastid | 53.51 | 41.6 |
| Bra038717.1-P | Field mustard | cytosol | 49.19 | 40.62 |
| CDY50548 | Canola | cytosol | 49.19 | 40.62 |
| AT3G12470.1 | Thale cress | mitochondrion | 40.54 | 34.09 |
| CDY71159 | Canola | cytosol | 47.03 | 33.98 |
| AT2G36110.1 | Thale cress | mitochondrion | 41.08 | 31.8 |
| KRH36952 | Soybean | cytosol | 34.59 | 31.07 |
| AT3G12440.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 55.14 | 28.9 |
| KRH11911 | Soybean | nucleus | 32.97 | 26.75 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 23.78 | 22.11 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 23.24 | 21.61 |
| EES02313 | Sorghum | mitochondrion, plastid | 25.41 | 19.42 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 18.38 | 17.89 |
| Zm00001d018645_P001 | Maize | mitochondrion | 23.78 | 16.24 |
| OQU88309 | Sorghum | mitochondrion | 18.92 | 14.34 |
| Os07t0112300-00 | Rice | mitochondrion | 8.65 | 13.79 |
| AT4G13870.2 | Thale cress | nucleus | 16.22 | 10.42 |
| Os07t0112400-00 | Rice | mitochondrion | 27.03 | 10.08 |
| EER95744 | Sorghum | nucleus | 24.86 | 9.45 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 26.49 | 8.36 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 24.86 | 8.0 |
| AT4G13885.1 | Thale cress | nucleus | 10.27 | 7.22 |
Protein Annotations
| MapMan:35.2 | EntrezGene:820421 | ProteinID:AEE75195.1 | ArrayExpress:AT3G12420 | EnsemblPlantsGene:AT3G12420 | RefSeq:AT3G12420 |
| TAIR:AT3G12420 | RefSeq:AT3G12420-TAIR-G | EnsemblPlants:AT3G12420.1 | TAIR:AT3G12420.1 | UniProt:F4J9R7 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016787 | GO:GO:0090305 | RefSeq:NP_187848.2 |
| PO:PO:0000084 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF8 | InterPro:RNaseH-like_sf | SUPFAM:SSF53098 | UniParc:UPI0001A7B059 |
| SEG:seg | : | : | : | : | : |
Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J9R7]
Coordinates
chr3:-:3948014..3949003
Molecular Weight (calculated)
21012.5 Da
IEP (calculated)
6.331
GRAVY (calculated)
-0.590
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTIRTGGY YSTHQEYSID VFGNTLSVTV TSDFAIISQW IHEVEYNNCR PYYLQPLVVG VGVQWTPPVS YDANPPPDRY YSDHHPPRSY DPNPPPNRYY
101: SDHHPPHPPA DTLQLCVGNQ CLIIQLCHCD QVPTSLRSFL TDPNTTFVGV WNSQDAGKLA RSKHQLEIGK LLDIRTEARS CDKHE
101: SDHHPPHPPA DTLQLCVGNQ CLIIQLCHCD QVPTSLRSFL TDPNTTFVGV WNSQDAGKLA RSKHQLEIGK LLDIRTEARS CDKHE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.