Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G12470.1 | Thale cress | mitochondrion | 48.95 | 53.18 |
| AT3G12410.1 | Thale cress | plastid | 49.37 | 51.3 |
| AT3G12460.1 | Thale cress | cytosol, nucleus, plastid | 50.21 | 49.59 |
| AT3G12430.1 | Thale cress | cytosol, nucleus, plastid | 46.44 | 46.64 |
| KRH36952 | Soybean | cytosol | 35.56 | 41.26 |
| AT3G12420.1 | Thale cress | cytosol | 31.8 | 41.08 |
| KRH11911 | Soybean | nucleus | 38.08 | 39.91 |
| AT3G12440.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 48.12 | 32.58 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 26.78 | 32.16 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 25.94 | 31.16 |
| Os07t0112300-00 | Rice | mitochondrion | 14.64 | 30.17 |
| EES02313 | Sorghum | mitochondrion, plastid | 27.62 | 27.27 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 20.08 | 25.26 |
| Zm00001d018645_P001 | Maize | mitochondrion | 25.94 | 22.88 |
| OQU88309 | Sorghum | mitochondrion | 22.59 | 22.13 |
| Os07t0112400-00 | Rice | mitochondrion | 33.47 | 16.13 |
| AT4G13870.2 | Thale cress | nucleus | 18.41 | 15.28 |
| EER95744 | Sorghum | nucleus | 30.54 | 14.99 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 30.54 | 12.46 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 29.29 | 12.17 |
| AT4G13885.1 | Thale cress | nucleus | 12.55 | 11.41 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | EntrezGene:818184 | UniProt:A0A178VRY8 | ProteinID:AAD26968.1 |
| ProteinID:AAT69162.1 | ProteinID:AEC09207.1 | ArrayExpress:AT2G36110 | EnsemblPlantsGene:AT2G36110 | RefSeq:AT2G36110 | TAIR:AT2G36110 |
| RefSeq:AT2G36110-TAIR-G | EnsemblPlants:AT2G36110.1 | TAIR:AT2G36110.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 |
| GO:GO:0016740 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | RefSeq:NP_181155.1 | ProteinID:OAP09207.1 |
| PFAM:PF01612 | PO:PO:0000293 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF8 | UniProt:Q9SIH3 | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI0000048D9C | SEG:seg | : |
Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
Coordinates
chr2:+:15161702..15162790
Molecular Weight (calculated)
28308.3 Da
IEP (calculated)
9.536
GRAVY (calculated)
-0.379
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.