CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02313	Sorghum	mitochondrion, plastid	54.1	54.55
Os07t0112300-00	Rice	mitochondrion	25.82	54.31
Zm00001d018645_P001	Maize	mitochondrion	53.69	48.34
TraesCS1D01G315900.1	Wheat	mitochondrion	38.52	47.24
TraesCS1A01G315700.1	Wheat	mitochondrion	35.25	43.22
TraesCS1B01G327900.1	Wheat	mitochondrion	34.84	42.71
EES03385	Sorghum	cytosol, nucleus, plastid	23.36	28.36
KRH36952	Soybean	cytosol	23.77	28.16
KRH11911	Soybean	nucleus	25.0	26.75
EES03384	Sorghum	nucleus	21.72	26.24
EES01441	Sorghum	cytosol, nucleus, plastid	22.13	25.71
EES01442	Sorghum	nucleus	21.72	25.48
CDY50341	Canola	cytosol	22.54	25.0
Bra038723.1-P	Field mustard	cytosol	22.54	25.0
EES01443	Sorghum	cytosol	20.49	24.63
Bra038722.1-P	Field mustard	cytosol	21.72	24.42
Bra038717.1-P	Field mustard	cytosol	22.13	24.11
KXG33324	Sorghum	cytosol	19.26	23.86
GSMUA_Achr1P12990_001	Banana	plastid	18.44	23.68
CDY50548	Canola	cytosol	21.72	23.66
Bra038721.1-P	Field mustard	plastid	17.62	23.5
KXG32361	Sorghum	mitochondrion	20.49	22.83
AT2G36110.1	Thale cress	mitochondrion	22.13	22.59
AT3G12410.1	Thale cress	plastid	20.9	22.17
AT3G12470.1	Thale cress	mitochondrion	19.67	21.82
OQU87276	Sorghum	nucleus	20.08	21.68
EER95744	Sorghum	nucleus	43.03	21.56
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	21.31	21.49
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	20.9	21.43
EES03381	Sorghum	nucleus	19.67	21.24
CDY50545	Canola	cytosol, nucleus, plastid	20.08	21.12
CDY71159	Canola	cytosol	22.13	21.09
CDY50340	Canola	nucleus	13.93	20.61
AT3G12420.1	Thale cress	cytosol	14.34	18.92
CDY50339	Canola	plastid	12.7	17.32
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	23.36	16.15
EES11779	Sorghum	nucleus	15.16	11.9

Protein Annotations

EnsemblPlants:OQU88309	EnsemblPlantsGene:SORBI_3002G007600	EntrezGene:8081604	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8
ProteinID:OQU88309	ProteinID:OQU88309.1	RefSeq:XP_002459224.1	SEG:seg	SUPFAM:SSF53098	UniParc:UPI0001A82D30
UniProt:A0A1W0W1P0	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:709044..710007

Molecular Weight (calculated)

26746.3 Da

IEP (calculated)

5.221

GRAVY (calculated)

-0.482

Length

244 amino acids

Sequence
(BLAST)

001: MVARPRRRRR GSADGDGLTV GLGVQWTPPF RKLPAGAEPR PGTLQLCAGN SCLVFKIAQA GGAVPRILRR FLADARVTFA AYNVESYCRK LRAHHGLDVA
101: STLELRSAGD GLGNAPMAEM ASRLLGIPRG RVEKPPWIAT SEWDGERLSW GQVRYAAADA YLSCRLGERI RGRRVVHAVE SEDEYESSDD GDESGESREQ
201: EDADDDADGR WTHRFVGFIG VGGGCVDDED DMCLPYETPA FTLY

Best Arabidopsis Sequence Match ( AT3G12440.1 )
(BLAST)

001: MAPRIRSIGS YATQGKFSVD FFGDEFIVTV TSDPSVIGQW IHDVLRFSSR PLVVGVGVQW TPHPTSPPAR YHSPVSYHSD SSPVTHHYDS PPVCYRSDSP
101: PAQYCSVSPP ARYSSDSPPA QYRSVSPPAQ YRSVSPPALY RSVSPPARYR SVSPPVRYRS DSPPAQFRSV SPPARYLSDS PLVRYRSVSP PARYLSVSPP
201: ARYRSVSPPA RSDPPANTLQ LCVGNRCIII QLFYCNRVPH VLRRFLGDRN HTFVGFWNSQ DAGKLKRSRH RLEIAELLDL RNHVVDSRGR GLKGRSFEVV
301: VGECLGYRGV RLEKAIGMSD WSVYDLSYDQ ILQASIDVYV CSKLGFRNRL WEF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.