CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50548	Canola	cytosol	76.95	87.95
CDY50341	Canola	cytosol	49.22	57.27
CDY50340	Canola	nucleus	36.33	56.36
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	50.78	54.62
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	49.22	52.07
AT3G12420.1	Thale cress	cytosol	33.98	47.03
CDY50545	Canola	cytosol, nucleus, plastid	40.62	44.83
CDY50339	Canola	plastid	31.25	44.69
KRH36952	Soybean	cytosol	35.55	44.17
KRH11911	Soybean	nucleus	35.55	39.91
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	49.61	35.98
Os07t0112300-00	Rice	mitochondrion	15.23	33.62
TraesCS1D01G315900.1	Wheat	mitochondrion	24.61	31.66
TraesCS1A01G315700.1	Wheat	mitochondrion	24.22	31.16
EES02313	Sorghum	mitochondrion, plastid	27.34	28.93
GSMUA_Achr1P12990_001	Banana	plastid	19.14	25.79
Zm00001d018645_P001	Maize	mitochondrion	26.56	25.09
OQU88309	Sorghum	mitochondrion	21.09	22.13
CDY01171	Canola	nucleus	16.41	15.27
EER95744	Sorghum	nucleus	28.91	15.2
Os07t0112400-00	Rice	mitochondrion	28.52	14.72
CDY50420	Canola	nucleus	15.62	14.55
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	29.3	12.8
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	28.12	12.52

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	GO:A0A078JWM4	UniProt:A0A078JWM4	EnsemblPlants:CDY71159
ProteinID:CDY71159	ProteinID:CDY71159.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:GSBRNA2T00011766001	InterPro:IPR036397	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI0004EE2377	SEG:seg

Description

BnaCnng71620DBnaCnng71620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JWM4]

Coordinates

chrLK044716:+:138..980

Molecular Weight (calculated)

29111.4 Da

IEP (calculated)

4.718

GRAVY (calculated)

-0.231

Length

256 amino acids

Sequence
(BLAST)

001: MVEKKVEVVG LEKEVEMVGV VEVVGHYTYT LENDNKKKIL SLATRRSSMA PTIRTVATYN THQEHTVDFF GNEFTVTVTR STSVITRWIN NVQYYNHYSS
101: SHPLVVGVGV QWTPADPEAD TLQLCVGTRC LVIQLSHCDD VPDELRSFLT DPRTVYVGFW NGQDAGKLAR SRHGLEIGEL LDLRNYVQDS GGFGMSRCSF
201: EEMVEECMGY QGVRLDRGIS MSDWSAYELD HEQILQASVD AYVCFELGVW VRLWEY

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.