Factsheet for Os07t0112400-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0112300-00	Rice	mitochondrion	11.9	50.86
EER95744	Sorghum	nucleus	43.75	44.56
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	49.8	42.15
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	47.98	41.39
KRH36952	Soybean	cytosol	16.73	40.29
Os01t0660800-01	Rice	nucleus	13.91	34.67
KRH11911	Soybean	nucleus	15.52	33.77
Os04t0225100-01	Rice	cytosol	14.31	33.65
AT2G36110.1	Thale cress	mitochondrion	16.13	33.47
Os01t0737600-00	Rice	cytosol	13.71	32.69
Bra038717.1-P	Field mustard	cytosol	14.72	32.59
AT3G12470.1	Thale cress	mitochondrion	14.31	32.27
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	15.73	32.23
CDY50548	Canola	cytosol	14.52	32.14
CDY50341	Canola	cytosol	13.91	31.36
Os11t0222320-00	Rice	cytosol, nucleus	8.47	31.11
Bra038723.1-P	Field mustard	cytosol	13.71	30.91
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	14.52	30.25
AT3G12410.1	Thale cress	plastid	13.91	30.0
Bra038722.1-P	Field mustard	cytosol	13.1	29.95
Os01t0300000-01	Rice	nucleus	12.1	29.85
Os01t0737700-00	Rice	nucleus	13.51	28.63
CDY71159	Canola	cytosol	14.72	28.52
GSMUA_Achr1P12990_001	Banana	plastid	10.48	27.37
AT3G12420.1	Thale cress	cytosol	10.08	27.03
Bra038721.1-P	Field mustard	plastid	9.88	26.78
CDY50340	Canola	nucleus	8.87	26.67
CDY50545	Canola	cytosol, nucleus, plastid	11.09	23.71
Os01t0299700-01	Rice	cytosol, peroxisome	11.09	23.21
CDY50339	Canola	plastid	7.66	21.23
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	14.31	20.11
Os04t0129200-00	Rice	nucleus	9.68	16.11
Os01t0660500-00	Rice	mitochondrion	12.5	15.86

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	UniProt:A0A0P0X1K0	ProteinID:BAS99776.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	EnsemblPlantsGene:Os07g0112400
EnsemblPlants:Os07t0112400-00	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF33	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SUPFAM:SSF53098	UniParc:UPI0000F137A2	SEG:seg	:	:	:

Description

3'-5' exonuclease domain containing protein. (Os07t0112400-00)

Coordinates

chr7:-:693416..694906

Molecular Weight (calculated)

54090.0 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.282

Length

496 amino acids

Sequence
(BLAST)

001: MDAAATRVST RLRRSTQTHA AYTVHVADRR VIALVTAHPA YARRWVHTTR WLHHRLLRSG RLLVGLGVQW TPLRRPLHRG SPPPPPATLQ LCVGHRCLVF
101: HLAHADAIPA ALRRFLADPR ITFVGSGASN DRRMLSAYYD LHVASARELR AVAAMGNASM EAMADRFLGY PGIAKPTNVS MSAWHAPYLS IEQVEYACVD
201: AYLAFRLAVH LCPAPARQPV LRAPPPPPPA PRAPVYHHPL PLGPRVAVLA APAPRPARHA PVRARVAPPV YRAVARAEPA AAQTHWALVA TAVDDDASES
301: EYSSKITDNV RPRVAASDSD IEEEDDDGLS MIHSSSYASD DHVFSSDDFE LVGHGLLSSD DEDGYEDFVL GMGALNIDID DDDDYNGNTG SIGILTVQSY
401: NEHSSIGILT VENYDMAGTE EMFVRNGVAT LEELEEDDIV TGAGTVTVDE GGGGYEAFEG NSQAFDDVEE GGYVEDDWYD EDEEELLDYD TSGGFY

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.