Factsheet for Os04t0129200-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G001690.1	Barley	plastid	57.38	73.39
TraesCS2B01G010000.1	Wheat	nucleus	71.14	71.86
TraesCS2A01G011600.1	Wheat	nucleus	70.81	71.28
EES11779	Sorghum	nucleus	72.82	69.77
TraesCS2D01G012000.1	Wheat	nucleus	69.46	69.46
Zm00001d004468_P003	Maize	nucleus	70.13	68.98
GSMUA_AchrUn_...	Banana	nucleus	42.95	44.6
Solyc09g092340.2.1	Tomato	nucleus	44.63	44.33
PGSC0003DMT400053073	Potato	nucleus	44.3	43.85
CDY50420	Canola	nucleus	38.93	42.18
CDY01171	Canola	nucleus	38.93	42.18
Bra032748.1-P	Field mustard	nucleus	38.93	41.88
AT4G13870.2	Thale cress	nucleus	39.93	41.32
KRH31568	Soybean	mitochondrion	27.52	40.39
KRG97350	Soybean	nucleus	39.26	40.07
VIT_05s0029g00410.t01	Wine grape	nucleus	38.26	37.87
Os04t0225100-01	Rice	cytosol	20.13	28.44
Os01t0300000-01	Rice	nucleus	19.13	28.36
Os01t0660800-01	Rice	nucleus	18.46	27.64
AT4G13885.1	Thale cress	nucleus	23.83	27.0
Os01t0737600-00	Rice	cytosol	18.46	26.44
Os11t0222320-00	Rice	cytosol, nucleus	11.41	25.19
Os01t0737700-00	Rice	nucleus	18.79	23.93
Os07t0112300-00	Rice	mitochondrion	8.39	21.55
Os01t0299700-01	Rice	cytosol, peroxisome	16.44	20.68
Os01t0660500-00	Rice	mitochondrion	20.81	15.86
Os07t0112400-00	Rice	mitochondrion	16.11	9.68

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:4334995	ProteinID:BAF14003.1	ProteinID:BAS87696.1
ProteinID:CAE03814.2	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	EnsemblPlantsGene:Os04g0129200	EnsemblPlants:Os04t0129200-00	PFAM:PF01612
PANTHER:PTHR13620	PANTHER:PTHR13620:SF19	UniProt:Q7XP25	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474
SUPFAM:SSF53098	UniParc:UPI000021C849	RefSeq:XP_015634570.1	SEG:seg	:	:

Description

Similar to OSIGBa0131J24.2 protein. (Os04t0129200-00)

Coordinates

chr4:-:1837130..1839583

Molecular Weight (calculated)

32974.1 Da

IEP (calculated)

4.951

GRAVY (calculated)

-0.373

Length

298 amino acids

Sequence
(BLAST)

001: MNSGEPPASS SLGNAGEEEE EDDFYWDAEA EAELQAIEAA YAAAKRRRLP DWPSPNPVTA SASASASGGC SPAPPWAPSP PAFRGNVKAR YQPVMFNGSI
101: VYCRTPSEVE KATRDILCKI ETMKASGQVS LGFDLEWRPF PRRGDPPCKV AVMQLCMERT RCYVMHIIHS GVPPVLKSLL EDSSSVKVGI CIDNDARKMF
201: NDYDVHVQPL MDLSNLANAK LGFPPKRWSL ASLTEMVTCR ELPKPSNIRM GNWEAYVLSK QQLQYAATDA YISWHLYEVL QSLPDNNVEV EKETITAA

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.