CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31568	Soybean	mitochondrion	59.93	86.21
CDY01171	Canola	nucleus	46.92	49.82
CDY50420	Canola	nucleus	46.92	49.82
PGSC0003DMT400053073	Potato	nucleus	50.68	49.17
Bra032748.1-P	Field mustard	nucleus	46.58	49.1
Solyc09g092340.2.1	Tomato	nucleus	50.0	48.67
AT4G13870.2	Thale cress	nucleus	45.55	46.18
VIT_05s0029g00410.t01	Wine grape	nucleus	45.89	44.52
HORVU2Hr1G001690.1	Barley	plastid	34.59	43.35
Zm00001d004468_P003	Maize	nucleus	41.44	39.93
TraesCS2A01G011600.1	Wheat	nucleus	40.07	39.53
TraesCS2B01G010000.1	Wheat	nucleus	39.73	39.32
Os04t0129200-00	Rice	nucleus	40.07	39.26
TraesCS2D01G012000.1	Wheat	nucleus	39.73	38.93
EES11779	Sorghum	nucleus	41.1	38.59
GSMUA_AchrUn_...	Banana	nucleus	33.9	34.49
AT4G13885.1	Thale cress	nucleus	24.66	27.38
KRH49260	Soybean	cytosol, nucleus, peroxisome	19.86	27.36
KRH00114	Soybean	cytosol	20.89	26.99
KRH49255	Soybean	nucleus	21.92	26.89
KRH00112	Soybean	nucleus	18.15	26.5
KRH00115	Soybean	nucleus	19.18	26.29
KRH00116	Soybean	cytosol	17.81	24.64
KRH26003	Soybean	nucleus	17.47	24.52
KRH63674	Soybean	cytosol	12.67	22.42
KRH36952	Soybean	cytosol	12.67	17.96
KRH11911	Soybean	nucleus	12.67	16.23

Protein Annotations

EntrezGene:100801291	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EMBL:ACUP02010794	EnsemblPlantsGene:GLYMA_18G002300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
UniProt:I1MYA3	InterPro:IPR036397	ProteinID:KRG97349.1	EnsemblPlants:KRG97350	ProteinID:KRG97350	ProteinID:KRG97350.1
PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF19	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474
SUPFAM:SSF53098	UniParc:UPI000233EE31	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:196119..200524

Molecular Weight (calculated)

32572.0 Da

IEP (calculated)

7.586

GRAVY (calculated)

-0.440

Length

292 amino acids

Sequence
(BLAST)

001: MEKEEEGGFT RLASFVCDCE PLTEDDLEAI EASLSNNKKR PFNDHTHTPR RRLPKSLIAL QHPNASSFSP HPRPCDSRMT LPVMKFSGQI SYSRTFDAVE
101: KAATKLLQIL QEKTTDMMQT AIGFDIEWKP TFRKGVPPGK VAVMQICGDT RHCHVLHLIH SGIPQNLQLL LEDPTVLKVG AGIDGDAVKV FRDYNISVKG
201: VTDLSFHANQ KLGGDHKWGL ASLTEKLLSK QLKKPNKIRL GNWEAPVLSK EQLEYAATDA FASWCLYQAI KDLPDAQKVT DRSGQVDAVP QE

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.