CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004468_P003	Maize	nucleus	90.35	92.74
Os04t0129200-00	Rice	nucleus	69.77	72.82
HORVU2Hr1G001690.1	Barley	plastid	54.02	72.1
TraesCS2A01G011600.1	Wheat	nucleus	67.52	70.95
TraesCS2B01G010000.1	Wheat	nucleus	67.2	70.85
TraesCS2D01G012000.1	Wheat	nucleus	66.56	69.46
Solyc09g092340.2.1	Tomato	nucleus	42.77	44.33
PGSC0003DMT400053073	Potato	nucleus	41.8	43.19
KRH31568	Soybean	mitochondrion	27.97	42.86
GSMUA_AchrUn_...	Banana	nucleus	39.55	42.86
KRG97350	Soybean	nucleus	38.59	41.1
CDY50420	Canola	nucleus	36.01	40.73
CDY01171	Canola	nucleus	35.69	40.36
Bra032748.1-P	Field mustard	nucleus	35.69	40.07
AT4G13870.2	Thale cress	nucleus	35.37	38.19
VIT_05s0029g00410.t01	Wine grape	nucleus	35.37	36.54
EES01442	Sorghum	nucleus	18.97	28.37
EES01441	Sorghum	cytosol, nucleus, plastid	17.68	26.19
EES01443	Sorghum	cytosol	16.72	25.62
EES03385	Sorghum	cytosol, nucleus, plastid	16.4	25.37
AT4G13885.1	Thale cress	nucleus	20.9	24.71
KXG32361	Sorghum	mitochondrion	17.04	24.2
KXG33324	Sorghum	cytosol	15.11	23.86
EES03384	Sorghum	nucleus	15.43	23.76
OQU87276	Sorghum	nucleus	17.04	23.45
EES03381	Sorghum	nucleus	16.72	23.01
EES02313	Sorghum	mitochondrion, plastid	12.22	15.7
OQU88309	Sorghum	mitochondrion	11.9	15.16
EER95744	Sorghum	nucleus	13.18	8.42

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:8080285	UniProt:C5YBT8	EnsemblPlants:EES11779
ProteinID:EES11779	ProteinID:EES11779.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF19
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	EnsemblPlantsGene:SORBI_3006G012300	SUPFAM:SSF53098	UniParc:UPI0001A871BF
RefSeq:XP_002447451.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:1807099..1811817

Molecular Weight (calculated)

34290.8 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.372

Length

311 amino acids

Sequence
(BLAST)

001: MAMHPGAGAG AGAPPASSVH GNVDEYDDFH WDDAAEAELQ AIEAAYASAS AAAKRRRLPD WTSPSPSPSS RPRYSQSPVS GGSTPLWALT PHTPQGNVRA
101: RRQQISFNGK IVYCRTPSEA EKAATDILLK IERMKAPRQV SLGFDLEWRP FPRRGEPPCK VAVMQLCMEK TLCYVLHIAH SGVPPILKTL LEDSSSIKVG
201: ICIDNDARKM LNDYDVCVQP LMDLSTLANV KLATPPKRWS LASLTEMITC KELPKPSNIR MGNWEVDVLT KQQLQYAATD AYISWYLYEA LQTLPDYTTE
301: AEAESESVKA Q

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.