CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043554_P001	Maize	cytosol	83.25	82.84
EES01441	Sorghum	cytosol, nucleus, plastid	70.44	68.1
EES01442	Sorghum	nucleus	63.05	61.54
KXG33324	Sorghum	cytosol	56.65	58.38
EES03385	Sorghum	cytosol, nucleus, plastid	51.23	51.74
EES03384	Sorghum	nucleus	48.28	48.51
PGSC0003DMT400093830	Potato	cytosol	44.83	44.39
Solyc10g078200.1.1	Tomato	nucleus	43.35	42.93
VIT_08s0040g00710.t01	Wine grape	cytosol	43.35	42.31
Solyc08g078620.1.1	Tomato	mitochondrion	42.86	42.03
OQU87276	Sorghum	nucleus	45.32	40.71
KRH00115	Soybean	nucleus	42.36	40.38
KRH00116	Soybean	cytosol	41.38	39.81
KRH49260	Soybean	cytosol, nucleus, peroxisome	41.38	39.62
PGSC0003DMT400075613	Potato	nucleus	42.86	39.55
EES03381	Sorghum	nucleus	43.84	39.38
Solyc12g094540.1.1	Tomato	cytosol	39.41	39.22
PGSC0003DMT400094103	Potato	mitochondrion	39.41	37.56
Solyc12g042390.1.1	Tomato	cytosol	39.9	37.33
Solyc01g103460.2.1	Tomato	cytosol	38.42	36.62
PGSC0003DMT400064032	Potato	nucleus	38.42	36.28
KRH49255	Soybean	nucleus	42.36	36.13
KRH00114	Soybean	cytosol	39.41	35.4
KXG32361	Sorghum	mitochondrion	37.93	35.16
Solyc11g006480.1.1	Tomato	nucleus	30.54	35.03
Solyc08g007350.1.1	Tomato	cytosol	39.9	34.47
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	39.41	34.33
PGSC0003DMT400032554	Potato	cytosol	39.9	32.14
GSMUA_Achr1P12990_001	Banana	plastid	29.56	31.58
KRH00112	Soybean	nucleus	31.03	31.5
PGSC0003DMT400036459	Potato	extracellular	32.51	30.56
EES02313	Sorghum	mitochondrion, plastid	30.05	25.21
OQU88309	Sorghum	mitochondrion	24.63	20.49
EES11779	Sorghum	nucleus	25.62	16.72
EER95744	Sorghum	nucleus	33.5	13.96

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	UniProt:C5XJ64	EnsemblPlants:EES01443	ProteinID:EES01443
ProteinID:EES01443.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF14	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
EnsemblPlantsGene:SORBI_3003G289200	SUPFAM:SSF53098	UniParc:UPI0001A84925	RefSeq:XP_002456323.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:62194599..62195288

Molecular Weight (calculated)

22252.6 Da

IEP (calculated)

4.993

GRAVY (calculated)

0.146

Length

203 amino acids

Sequence
(BLAST)

001: MATEIQGYYD DGTVVVSFDA DHIDTTVTNF GSVVEWWLGE TYRLHGRGGH IAGLDVEWRP ARVPGPVVPP VAVLQICVDH RCLVFQILRA DYVPDALSRF
101: LADHRFTFVG VGIGDDVAKL GAGYGLWVAS AVDLRELAAD TLGRPVLRRA GLPALVWVVM GLQMQKPHHV RDAPALSDDQ VKYACADAFA SFEVGLRLYD
201: GDY

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.