Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 85.19 | 78.97 |
| Solyc08g007350.1.1 | Tomato | cytosol | 81.94 | 75.32 |
| PGSC0003DMT400032554 | Potato | cytosol | 79.63 | 68.25 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 39.81 | 43.65 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 39.81 | 43.65 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 39.81 | 43.65 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 37.5 | 42.41 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 39.35 | 42.29 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 38.89 | 42.0 |
| Os01t0660800-01 | Rice | nucleus | 38.43 | 41.71 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 40.74 | 41.51 |
| PGSC0003DMT400093830 | Potato | cytosol | 38.89 | 40.98 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 39.35 | 40.67 |
| Zm00001d011507_P001 | Maize | cytosol | 37.96 | 40.59 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 38.89 | 40.38 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 35.65 | 40.1 |
| EES03384 | Sorghum | nucleus | 37.5 | 40.1 |
| PGSC0003DMT400087534 | Potato | cytosol, nucleus, plastid | 29.17 | 39.87 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 37.04 | 39.8 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 33.8 | 39.04 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 37.5 | 38.94 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 37.5 | 38.94 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 35.19 | 38.0 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 34.72 | 37.5 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 32.87 | 37.37 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 39.81 | 37.07 |
| EES01442 | Sorghum | nucleus | 35.65 | 37.02 |
| Os01t0737600-00 | Rice | cytosol | 35.65 | 37.02 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 39.81 | 36.91 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 35.19 | 36.19 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 37.96 | 35.81 |
| Os04t0225100-01 | Rice | cytosol | 34.72 | 35.55 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 32.87 | 35.15 |
| PGSC0003DMT400075613 | Potato | nucleus | 35.65 | 35.0 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 32.41 | 35.0 |
| OQU87276 | Sorghum | nucleus | 36.57 | 34.96 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 31.94 | 34.85 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 21.76 | 34.81 |
| PGSC0003DMT400092627 | Potato | nucleus | 32.41 | 33.98 |
| PGSC0003DMT400064032 | Potato | nucleus | 33.8 | 33.95 |
| Zm00001d043554_P001 | Maize | cytosol | 31.94 | 33.82 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 33.33 | 33.8 |
| KXG33324 | Sorghum | cytosol | 30.56 | 33.5 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 35.65 | 32.63 |
| EES01443 | Sorghum | cytosol | 30.56 | 32.51 |
| Os01t0737700-00 | Rice | nucleus | 33.8 | 31.2 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 35.19 | 30.89 |
| PGSC0003DMT400016348 | Potato | nucleus | 29.63 | 30.62 |
| EES03381 | Sorghum | nucleus | 31.48 | 30.09 |
| Zm00001d047288_P001 | Maize | nucleus | 22.69 | 24.26 |
| Zm00001d036734_P001 | Maize | nucleus | 25.46 | 20.45 |
| Os01t0660500-00 | Rice | mitochondrion | 36.57 | 20.2 |
| Zm00001d011513_P001 | Maize | plastid | 35.65 | 17.66 |
| PGSC0003DMT400053073 | Potato | nucleus | 24.07 | 17.28 |
| Zm00001d022094_P001 | Maize | nucleus | 25.0 | 12.8 |
| Zm00001d010107_P001 | Maize | nucleus | 25.46 | 5.34 |
Protein Annotations
| EntrezGene:102579453 | InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | UniProt:M1B3N8 |
| PFAM:PF01612 | EnsemblPlantsGene:PGSC0003DMG400014043 | PGSC:PGSC0003DMG400014043 | EnsemblPlants:PGSC0003DMT400036459 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI0002951831 | RefSeq:XP_006355256.1 |
Description
3-5 exonuclease/ nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014043]
Coordinates
chr1:+:14532031..14532681
Molecular Weight (calculated)
24861.8 Da
IEP (calculated)
7.956
GRAVY (calculated)
0.033
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSLLMIGFW RPFMFGNQNK LVVGLDIEWL PCFNPDENHP VALLQLCVGR RCLLFQLLHK DGLPAFLAKF LGDPNVKFVG VGVKGDAEKL LRDHKLFVAN
101: TVDLNRLALS IYGEEVYGKM GLKRMAEEVL GKVMEKPKNV TLSKWDAEEL VYEQIEYAAI DAFMSFEIGR NLLKLVWKRE RESRPLPRVQ YLNCHYQPPL
201: LLLQDTQGMF QAFALF
101: TVDLNRLALS IYGEEVYGKM GLKRMAEEVL GKVMEKPKNV TLSKWDAEEL VYEQIEYAAI DAFMSFEIGR NLLKLVWKRE RESRPLPRVQ YLNCHYQPPL
201: LLLQDTQGMF QAFALF
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.