Factsheet for PGSC0003DMT400094103

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006480.1.1	Tomato	nucleus	69.48	83.62
PGSC0003DMT400064032	Potato	nucleus	64.32	63.72
VIT_08s0040g00710.t01	Wine grape	cytosol	50.7	51.92
PGSC0003DMT400093830	Potato	cytosol	48.36	50.24
PGSC0003DMT400075613	Potato	nucleus	49.3	47.73
KRH49260	Soybean	cytosol, nucleus, peroxisome	47.42	47.64
TraesCS3A01G239600.1	Wheat	cytosol	41.31	44.67
Zm00001d011507_P001	Maize	cytosol	42.25	44.55
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	40.85	44.16
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	40.85	44.16
KRH49255	Soybean	nucleus	48.83	43.7
TraesCS6B01G430200.1	Wheat	cytosol	40.85	43.5
KRH00115	Soybean	nucleus	43.19	43.19
TraesCS5A01G007100.1	Wheat	cytosol	40.38	42.79
Os01t0660800-01	Rice	nucleus	39.91	42.71
KRH00116	Soybean	cytosol	42.25	42.65
HORVU7Hr1G071770.1	Barley	cytosol	42.25	42.45
EES03385	Sorghum	cytosol, nucleus, plastid	39.91	42.29
EES03384	Sorghum	nucleus	39.91	42.08
KRH00114	Soybean	cytosol	44.6	42.04
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	39.44	42.0
TraesCS4A01G026000.1	Wheat	cytosol	37.56	41.88
Os01t0737600-00	Rice	cytosol	40.85	41.83
TraesCS7A01G302600.1	Wheat	cytosol	40.85	41.63
TraesCS3A01G239500.1	Wheat	nucleus	38.97	41.5
TraesCS7B01G202700.1	Wheat	cytosol	40.38	41.35
EES01442	Sorghum	nucleus	40.38	41.35
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	30.05	40.51
TraesCS3D01G239800.1	Wheat	nucleus	38.03	40.5
Zm00001d043554_P001	Maize	cytosol	38.5	40.2
TraesCS3D01G278900.1	Wheat	nucleus	38.97	39.9
TraesCS3B01G312800.1	Wheat	nucleus	38.97	39.9
EES01443	Sorghum	cytosol	37.56	39.41
TraesCS6A01G390200.1	Wheat	nucleus	36.62	39.39
TraesCS7D01G297900.1	Wheat	cytosol	34.27	39.04
PGSC0003DMT400016348	Potato	nucleus	38.03	38.76
EES01441	Sorghum	cytosol, nucleus, plastid	38.03	38.57
TraesCS3A01G278600.1	Wheat	cytosol	34.74	38.54
Os04t0225100-01	Rice	cytosol	38.03	38.39
PGSC0003DMT400092627	Potato	nucleus	37.09	38.35
KXG33324	Sorghum	cytosol	35.21	38.07
OQU87276	Sorghum	nucleus	39.91	37.61
TraesCS2A01G565200.1	Wheat	cytosol	40.85	37.5
Os01t0737700-00	Rice	nucleus	40.38	36.75
EES03381	Sorghum	nucleus	38.97	36.73
HORVU0Hr1G006750.1	Barley	nucleus	34.74	36.63
TraesCS2B01G625700.1	Wheat	cytosol	39.91	36.48
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	38.5	35.19
HORVU3Hr1G069990.1	Barley	nucleus	37.56	34.93
TraesCS3D01G239600.1	Wheat	cytosol	38.5	34.75
TraesCS3B01G267900.1	Wheat	cytosol	39.91	34.55
GSMUA_Achr1P12990_001	Banana	plastid	30.05	33.68
Os11t0222320-00	Rice	cytosol, nucleus	21.13	33.33
PGSC0003DMT400036459	Potato	extracellular	33.8	33.33
PGSC0003DMT400032554	Potato	cytosol	38.5	32.54
KRH00112	Soybean	nucleus	30.52	32.5
Zm00001d047288_P001	Maize	nucleus	20.19	21.29
Os01t0660500-00	Rice	mitochondrion	38.03	20.72
Zm00001d011513_P001	Maize	plastid	39.91	19.5
Zm00001d036734_P001	Maize	nucleus	24.41	19.33
PGSC0003DMT400053073	Potato	nucleus	26.76	18.94
Zm00001d022094_P001	Maize	nucleus	30.52	15.4
Zm00001d010107_P001	Maize	nucleus	30.52	6.32

Protein Annotations

EntrezGene:102578301	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	UniProt:M1DTE9
PFAM:PF01612	EnsemblPlantsGene:PGSC0003DMG400043674	PGSC:PGSC0003DMG400043674	EnsemblPlants:PGSC0003DMT400094103	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI00029673EC	RefSeq:XP_006365675.1

Description

3-5 exonuclease [Source:PGSC_GENE;Acc:PGSC0003DMG400043674]

Coordinates

chr11:+:6098098..6098739

Molecular Weight (calculated)

24668.5 Da

IEP (calculated)

4.931

GRAVY (calculated)

-0.288

Length

213 amino acids

Sequence
(BLAST)

001: MSVRIKDYQL PYNSHKLYDV FLNETEIETL VTRDPAMICS WIDSTESSNQ SRLHRLIVGI DIEWRPNFNP GAGQNPVATL QLCVGKSCLI YQIIHAPNIP
101: RKLRNFLNND DYRFVGVGIE NDVKKLLNDW GIGVSNTVDL REWAMEELEN DNLRSYGLKG LVKEILGIEI YKPKRVTMSD WDDRWLSIDQ VCYACLDAYL
201: SFEVGRILSS WYN

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.