Factsheet for TraesCS3D01G239900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	98.48	98.48
TraesCS3A01G239600.1	Wheat	cytosol	96.95	96.95
HORVU0Hr1G006750.1	Barley	nucleus	84.77	82.67
Os01t0660800-01	Rice	nucleus	69.54	68.84
TraesCS7D01G297900.1	Wheat	cytosol	62.44	65.78
Zm00001d011507_P001	Maize	cytosol	67.01	65.35
EES03384	Sorghum	nucleus	67.01	65.35
TraesCS3D01G239800.1	Wheat	nucleus	60.91	60.0
TraesCS3D01G278900.1	Wheat	nucleus	52.79	50.0
VIT_08s0040g00710.t01	Wine grape	cytosol	49.24	46.63
PGSC0003DMT400093830	Potato	cytosol	47.21	45.37
Solyc10g078200.1.1	Tomato	nucleus	46.7	44.88
Solyc08g078620.1.1	Tomato	mitochondrion	45.18	43.0
KRH49260	Soybean	cytosol, nucleus, peroxisome	45.18	41.98
KRH00115	Soybean	nucleus	44.67	41.31
PGSC0003DMT400075613	Potato	nucleus	45.69	40.91
PGSC0003DMT400094103	Potato	mitochondrion	44.16	40.85
Solyc12g094540.1.1	Tomato	cytosol	42.13	40.69
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	41.12	40.5
KRH00114	Soybean	cytosol	46.19	40.27
TraesCS3D01G239600.1	Wheat	cytosol	48.22	40.25
Solyc11g006480.1.1	Tomato	nucleus	36.04	40.11
PGSC0003DMT400036459	Potato	extracellular	43.65	39.81
KRH00116	Soybean	cytosol	42.64	39.81
Solyc12g042390.1.1	Tomato	cytosol	43.65	39.63
PGSC0003DMT400064032	Potato	nucleus	43.15	39.53
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	46.7	39.48
Solyc01g103460.2.1	Tomato	cytosol	42.64	39.44
Solyc08g007350.1.1	Tomato	cytosol	46.19	38.72
KRH49255	Soybean	nucleus	44.67	36.97
PGSC0003DMT400032554	Potato	cytosol	47.21	36.9
GSMUA_Achr1P12990_001	Banana	plastid	34.52	35.79
KRH00112	Soybean	nucleus	32.99	32.5
TraesCS1D01G315900.1	Wheat	mitochondrion	31.98	31.66
TraesCS2D01G012000.1	Wheat	nucleus	27.41	18.12
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	35.03	12.0

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS3D01G239900	EnsemblPlants:TraesCS3D01G239900.1
TIGR:cd06141	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:332326421..332327014

Molecular Weight (calculated)

21475.8 Da

IEP (calculated)

4.376

GRAVY (calculated)

0.174

Length

197 amino acids

Sequence
(BLAST)

001: MATDTFVTDV AFGADVIVTT VTNSGAAVEG WLQEIRSVLG DLVVGMDVEW RPSYSPSQNP VALLQLCVGR RCLIFQLLHA DFVPQALSGF LADPNLRFVG
101: VGVQEDVERL SDDHSLEVAN AVDLRGLAAE GMQMPELRQA GLQAVARTVM GANLQKPQRV RMGPWDAYCL SYDQIKYACI DAFVSFEVGR KLLTGDL

Best Arabidopsis Sequence Match ( AT3G12460.1 )
(BLAST)

001: MAPTIRTIGS YATQQRYSVD FFGEELFVTV TPDPSVIGQW IHDVFFHNRL SSHPLVVGVG VQWTPSGYHP ASPPVSYRSD SSPDSYRSDS PPVFYSSDPP
101: ADTLQLCVGN RCIIIQLRYC ERVPQVLRNF LADRDNTFVG IWNSQDAGKL ERSRHQLEIA ELMDLREFVS DSSGRRSMYN YSLEKIVEEN LGYPGVRLDR
201: EVSMSDWRVY NLSYDQILQA SIDVYACCSL AILDHLWEEK NR

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.