Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 68.84 | 69.54 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 68.34 | 69.04 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 68.34 | 69.04 |
| Zm00001d011507_P001 | Maize | cytosol | 68.84 | 67.82 |
| EES03384 | Sorghum | nucleus | 67.84 | 66.83 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 62.31 | 64.92 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 64.82 | 64.18 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 66.33 | 62.26 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 65.33 | 62.2 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 64.32 | 61.54 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 60.3 | 59.41 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 54.77 | 58.29 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 64.82 | 55.6 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 64.82 | 55.36 |
| Os01t0737600-00 | Rice | cytosol | 51.76 | 49.52 |
| Os04t0225100-01 | Rice | cytosol | 52.26 | 49.29 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 48.24 | 46.15 |
| KRH00115 | Soybean | nucleus | 47.74 | 44.6 |
| Os01t0300000-01 | Rice | nucleus | 44.72 | 44.28 |
| Solyc10g078200.1.1 | Tomato | nucleus | 45.23 | 43.9 |
| PGSC0003DMT400093830 | Potato | cytosol | 44.72 | 43.41 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 45.23 | 42.45 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 28.64 | 42.22 |
| KRH00114 | Soybean | cytosol | 47.74 | 42.04 |
| KRH00116 | Soybean | cytosol | 44.22 | 41.71 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 43.22 | 41.55 |
| Solyc12g042390.1.1 | Tomato | cytosol | 44.72 | 41.01 |
| Solyc12g094540.1.1 | Tomato | cytosol | 41.71 | 40.69 |
| PGSC0003DMT400075613 | Potato | nucleus | 44.72 | 40.45 |
| Solyc01g103460.2.1 | Tomato | cytosol | 43.22 | 40.38 |
| Solyc11g006480.1.1 | Tomato | nucleus | 35.68 | 40.11 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 42.71 | 39.91 |
| PGSC0003DMT400064032 | Potato | nucleus | 42.71 | 39.53 |
| Os01t0737700-00 | Rice | nucleus | 46.23 | 39.32 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 45.23 | 38.63 |
| PGSC0003DMT400036459 | Potato | extracellular | 41.71 | 38.43 |
| Solyc08g007350.1.1 | Tomato | cytosol | 44.22 | 37.45 |
| KRH49255 | Soybean | nucleus | 44.72 | 37.4 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 35.68 | 37.37 |
| Os07t0112300-00 | Rice | mitochondrion | 20.6 | 35.34 |
| PGSC0003DMT400032554 | Potato | cytosol | 44.22 | 34.92 |
| Os01t0299700-01 | Rice | cytosol, peroxisome | 38.69 | 32.49 |
| KRH00112 | Soybean | nucleus | 29.65 | 29.5 |
| Os01t0660500-00 | Rice | mitochondrion | 47.24 | 24.04 |
| Os04t0129200-00 | Rice | nucleus | 27.64 | 18.46 |
| Os07t0112400-00 | Rice | mitochondrion | 34.67 | 13.91 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:4327176 | ProteinID:BAD72360.1 | ProteinID:BAD72488.1 |
| ProteinID:BAF05689.1 | ProteinID:BAS73535.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0090305 | InterPro:IPR036397 | EnsemblPlantsGene:Os01g0660800 | EnsemblPlants:Os01t0660800-01 | PFAM:PF01612 | PANTHER:PTHR13620 |
| PANTHER:PTHR13620:SF34 | UniProt:Q5SMR6 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 |
| UniParc:UPI000046D4B2 | RefSeq:XP_015622277.1 | : | : | : | : |
Description
3'-5' exonuclease domain containing protein. (Os01t0660800-01)
Coordinates
chr1:-:26967895..26968891
Molecular Weight (calculated)
21494.7 Da
IEP (calculated)
5.001
GRAVY (calculated)
0.121
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAADTDTYV TEVAFGDAVI TTTVTSSGAA VEGWLREVRA AYGPGLIVGL DVEWRPSYGP AQNPVALLQL CVDRRCLIFQ LLYADYVPGS LRRFLAGAAD
101: CFVGVGVDKD AERLSDDHGL TVANTADLRP LAAQRLGRPE LSQAGLQAVV RAVMGADLVK PQRVTMSRWD ASCLSNEQIR YACIDAYVSF EVGRRLLRA
101: CFVGVGVDKD AERLSDDHGL TVANTADLRP LAAQRLGRPE LSQAGLQAVV RAVMGADLVK PQRVTMSRWD ASCLSNEQIR YACIDAYVSF EVGRRLLRA
001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
Arabidopsis Description
WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.