Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0737600-00 | Rice | cytosol | 70.09 | 78.85 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 62.82 | 70.67 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 62.39 | 70.19 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 55.56 | 67.71 |
| EES01442 | Sorghum | nucleus | 57.69 | 64.9 |
| Os04t0225100-01 | Rice | cytosol | 54.7 | 60.66 |
| KXG33324 | Sorghum | cytosol | 50.0 | 59.39 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 58.12 | 59.39 |
| PGSC0003DMT400093830 | Potato | cytosol | 41.03 | 46.83 |
| Os01t0660800-01 | Rice | nucleus | 39.32 | 46.23 |
| Solyc10g078200.1.1 | Tomato | nucleus | 39.74 | 45.37 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 39.32 | 44.23 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 37.18 | 42.03 |
| KRH00115 | Soybean | nucleus | 37.61 | 41.31 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 36.75 | 40.38 |
| Solyc01g103460.2.1 | Tomato | cytosol | 36.32 | 39.91 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 35.9 | 39.62 |
| PGSC0003DMT400064032 | Potato | nucleus | 36.32 | 39.53 |
| KRH00116 | Soybean | cytosol | 35.47 | 39.34 |
| Solyc12g094540.1.1 | Tomato | cytosol | 34.19 | 39.22 |
| Solyc11g006480.1.1 | Tomato | nucleus | 29.49 | 38.98 |
| PGSC0003DMT400075613 | Potato | nucleus | 36.32 | 38.64 |
| KRH00114 | Soybean | cytosol | 36.32 | 37.61 |
| Solyc12g042390.1.1 | Tomato | cytosol | 34.62 | 37.33 |
| KRH49255 | Soybean | nucleus | 37.18 | 36.55 |
| Os01t0300000-01 | Rice | nucleus | 31.2 | 36.32 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 35.47 | 35.62 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 20.51 | 35.56 |
| Solyc08g007350.1.1 | Tomato | cytosol | 35.47 | 35.32 |
| PGSC0003DMT400036459 | Potato | extracellular | 31.2 | 33.8 |
| KRH00112 | Soybean | nucleus | 28.21 | 33.0 |
| PGSC0003DMT400032554 | Potato | cytosol | 35.47 | 32.94 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 26.5 | 32.63 |
| Os07t0112300-00 | Rice | mitochondrion | 15.81 | 31.9 |
| Os01t0299700-01 | Rice | cytosol, peroxisome | 28.63 | 28.27 |
| Os01t0660500-00 | Rice | mitochondrion | 35.9 | 21.48 |
| Os04t0129200-00 | Rice | nucleus | 23.93 | 18.79 |
| Os07t0112400-00 | Rice | mitochondrion | 28.63 | 13.51 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | UniProt:A0A0N7KDQ1 | ProteinID:BAS74241.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | EnsemblPlantsGene:Os01g0737700 |
| EnsemblPlants:Os01t0737700-00 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI000393A0B0 | : | : | : |
Description
Similar to OSIGBa0101A01.4 protein. (Os01t0737700-00)
Coordinates
chr1:+:30772299..30773134
Molecular Weight (calculated)
26452.0 Da
IEP (calculated)
4.291
GRAVY (calculated)
-0.212
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: TPEVNRQSDL GQFEGLNLKT PKAERDLSTS IVNDFGDGTY TVAFDEDKIY TTVTDSGEEV EEWLDEIVRI HHRRLDHLIV GLDVEWNPAS GFCALGPVAV
101: LQICVGRRCL VFQIIHADYV PDQLGDFLGD GRFTFVGVGI HDDVDKLREH YDLEVENAVD LRYLAAQTIG KPALRSTGLQ GLVWEVMDVW MEKPHHVRVS
201: AWDSRQLTLD QVMYACADAF ASFEVGRSLY DDYE
101: LQICVGRRCL VFQIIHADYV PDQLGDFLGD GRFTFVGVGI HDDVDKLREH YDLEVENAVD LRYLAAQTIG KPALRSTGLQ GLVWEVMDVW MEKPHHVRVS
201: AWDSRQLTLD QVMYACADAF ASFEVGRSLY DDYE
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.