Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036459 | Potato | extracellular | 78.97 | 85.19 |
| Solyc08g007350.1.1 | Tomato | cytosol | 84.98 | 84.26 |
| PGSC0003DMT400032554 | Potato | cytosol | 84.12 | 77.78 |
| PGSC0003DMT400093830 | Potato | cytosol | 42.92 | 48.78 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 39.48 | 46.7 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 39.48 | 46.7 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 39.48 | 46.7 |
| Zm00001d011507_P001 | Maize | cytosol | 39.91 | 46.04 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 39.48 | 45.77 |
| Zm00001d043985_P001 | Maize | cytosol, nucleus, plastid | 39.06 | 45.5 |
| HORVU7Hr1G071770.1 | Barley | cytosol | 41.2 | 45.28 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 39.06 | 45.27 |
| Os01t0660800-01 | Rice | nucleus | 38.63 | 45.23 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 36.91 | 45.03 |
| EES03384 | Sorghum | nucleus | 38.63 | 44.55 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 39.48 | 44.02 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 39.06 | 43.75 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 34.33 | 42.78 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 35.19 | 42.71 |
| Os01t0737600-00 | Rice | cytosol | 37.77 | 42.31 |
| EES01442 | Sorghum | nucleus | 37.34 | 41.83 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 37.34 | 41.43 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 36.91 | 41.35 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 36.91 | 41.35 |
| PGSC0003DMT400087534 | Potato | cytosol, nucleus, plastid | 27.47 | 40.51 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 34.76 | 40.5 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 34.76 | 40.5 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 34.33 | 40.0 |
| PGSC0003DMT400075613 | Potato | nucleus | 37.77 | 40.0 |
| TraesCS2A01G565200.1 | Wheat | cytosol | 39.48 | 39.66 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 39.48 | 39.48 |
| EES01443 | Sorghum | cytosol | 34.33 | 39.41 |
| Zm00001d043554_P001 | Maize | cytosol | 34.33 | 39.22 |
| HORVU0Hr1G006750.1 | Barley | nucleus | 33.91 | 39.11 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 33.05 | 38.89 |
| Os04t0225100-01 | Rice | cytosol | 35.19 | 38.86 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 35.19 | 38.5 |
| OQU87276 | Sorghum | nucleus | 37.34 | 38.5 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 37.77 | 38.43 |
| PGSC0003DMT400092627 | Potato | nucleus | 33.48 | 37.86 |
| PGSC0003DMT400064032 | Potato | nucleus | 34.76 | 37.67 |
| KXG33324 | Sorghum | cytosol | 31.76 | 37.56 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 21.03 | 36.3 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 29.18 | 35.79 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 36.05 | 35.59 |
| Os01t0737700-00 | Rice | nucleus | 35.62 | 35.47 |
| PGSC0003DMT400016348 | Potato | nucleus | 31.76 | 35.41 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 36.48 | 34.55 |
| EES03381 | Sorghum | nucleus | 32.62 | 33.63 |
| Zm00001d047288_P001 | Maize | nucleus | 20.17 | 23.27 |
| Os01t0660500-00 | Rice | mitochondrion | 37.34 | 22.25 |
| Zm00001d036734_P001 | Maize | nucleus | 23.61 | 20.45 |
| Zm00001d011513_P001 | Maize | plastid | 35.19 | 18.81 |
| PGSC0003DMT400053073 | Potato | nucleus | 23.18 | 17.94 |
| Zm00001d022094_P001 | Maize | nucleus | 24.89 | 13.74 |
| Zm00001d010107_P001 | Maize | nucleus | 24.89 | 5.64 |
Protein Annotations
| EntrezGene:102590692 | InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | UniProt:M1AXH3 |
| PFAM:PF01612 | EnsemblPlantsGene:PGSC0003DMG400012475 | PGSC:PGSC0003DMG400012475 | EnsemblPlants:PGSC0003DMT400032474 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI0002948ABF | RefSeq:XP_006358401.1 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012475]
Coordinates
chr8:-:553129..553830
Molecular Weight (calculated)
26819.2 Da
IEP (calculated)
9.093
GRAVY (calculated)
0.026
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEIYVVPFY SDQIEVTVTK NAVVVNDWIL ETLHLRKSNK LIVGLDIEWL PCFKPEENHP VALLQLCVGR RCLLFQLLHR NGLPAFLAKF LGDPNVKFVG
101: VGVKGDAEKL LRDHKLFVAN TVDLNRLALS VYGEQVYGKM GLKRMAKEVL GKVMEKPKNV TLSKWDAEEL VYEQVEYAAI DAFMSFKIGR NLLNLVWKRE
201: RESRPLPRLQ YLNCHYQPPL LLLQGMFQTF ALF
101: VGVKGDAEKL LRDHKLFVAN TVDLNRLALS VYGEQVYGKM GLKRMAKEVL GKVMEKPKNV TLSKWDAEEL VYEQVEYAAI DAFMSFKIGR NLLNLVWKRE
201: RESRPLPRLQ YLNCHYQPPL LLLQGMFQTF ALF
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.