Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G267900.1 | Wheat | cytosol | 92.8 | 89.02 |
| EES03381 | Sorghum | nucleus | 50.42 | 52.65 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 42.37 | 50.51 |
| OQU87276 | Sorghum | nucleus | 48.31 | 50.44 |
| TraesCS7D01G297900.1 | Wheat | cytosol | 38.56 | 48.66 |
| TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 40.25 | 48.22 |
| TraesCS3D01G239800.1 | Wheat | nucleus | 36.44 | 43.0 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 24.58 | 42.96 |
| TraesCS3D01G278900.1 | Wheat | nucleus | 37.29 | 42.31 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 36.02 | 40.87 |
| Solyc01g103460.2.1 | Tomato | cytosol | 36.02 | 39.91 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 34.75 | 38.5 |
| Solyc11g006480.1.1 | Tomato | nucleus | 28.81 | 38.42 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 33.05 | 37.68 |
| PGSC0003DMT400093830 | Potato | cytosol | 32.63 | 37.56 |
| TraesCS3D01G118000.1 | Wheat | nucleus, peroxisome, plastid | 31.78 | 37.5 |
| PGSC0003DMT400064032 | Potato | nucleus | 33.9 | 37.21 |
| Solyc10g078200.1.1 | Tomato | nucleus | 31.78 | 36.59 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 35.59 | 36.05 |
| KRH00116 | Soybean | cytosol | 32.2 | 36.02 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 32.2 | 35.85 |
| KRH00115 | Soybean | nucleus | 32.2 | 35.68 |
| PGSC0003DMT400036459 | Potato | extracellular | 32.63 | 35.65 |
| Solyc08g007350.1.1 | Tomato | cytosol | 35.17 | 35.32 |
| KRH00114 | Soybean | cytosol | 33.47 | 34.96 |
| Solyc12g094540.1.1 | Tomato | cytosol | 29.66 | 34.31 |
| KRH49255 | Soybean | nucleus | 34.32 | 34.03 |
| PGSC0003DMT400075613 | Potato | nucleus | 30.93 | 33.18 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 26.27 | 32.63 |
| PGSC0003DMT400032554 | Potato | cytosol | 34.75 | 32.54 |
| Solyc12g042390.1.1 | Tomato | cytosol | 28.81 | 31.34 |
| KRH00112 | Soybean | nucleus | 25.85 | 30.5 |
| Zm00001d011513_P001 | Maize | plastid | 51.69 | 27.98 |
| Os01t0660500-00 | Rice | mitochondrion | 43.64 | 26.34 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 21.61 | 25.63 |
| TraesCS2D01G012000.1 | Wheat | nucleus | 20.34 | 16.11 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 24.58 | 10.09 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF32 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | EnsemblPlantsGene:TraesCS3D01G239600 | EnsemblPlants:TraesCS3D01G239600.1 |
| TIGR:cd06141 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:332150383..332151093
Molecular Weight (calculated)
26351.1 Da
IEP (calculated)
6.883
GRAVY (calculated)
0.044
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MAITYHAPRQ SGDQPVAPRG SRVAADIVMD DGTVIRTTVT SSACDVLLFL RELQELFCKE IHDHNCLNKV QEHHHCLIVG LDTEWHQISV TGGKPRYQIA
101: VLQLCVGDRC LVYQIFHADY IPAELAAFLA NPDFCFVAVG VGGDVKRLHD DCNLEVAHTM DLPQVAAVVL GRPELRQAGL KTLAREVMNT LIEKPKKVIM
201: SKWAAPHLSR EQIRYACIDA FVSFDVGRRL LCEPRV
101: VLQLCVGDRC LVYQIFHADY IPAELAAFLA NPDFCFVAVG VGGDVKRLHD DCNLEVAHTM DLPQVAAVVL GRPELRQAGL KTLAREVMNT LIEKPKKVIM
201: SKWAAPHLSR EQIRYACIDA FVSFDVGRRL LCEPRV
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.