Factsheet for TraesCS2D01G012000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G011600.1	Wheat	nucleus	95.97	96.62
TraesCS2B01G010000.1	Wheat	nucleus	95.3	96.27
HORVU2Hr1G001690.1	Barley	plastid	72.48	92.7
Os04t0129200-00	Rice	nucleus	69.46	69.46
Zm00001d004468_P003	Maize	nucleus	68.12	67.0
EES11779	Sorghum	nucleus	69.46	66.56
Solyc09g092340.2.1	Tomato	nucleus	44.63	44.33
PGSC0003DMT400053073	Potato	nucleus	43.62	43.19
KRH31568	Soybean	mitochondrion	29.19	42.86
GSMUA_AchrUn_...	Banana	nucleus	41.28	42.86
KRG97350	Soybean	nucleus	38.93	39.73
CDY50420	Canola	nucleus	36.58	39.64
CDY01171	Canola	nucleus	36.58	39.64
Bra032748.1-P	Field mustard	nucleus	36.58	39.35
AT4G13870.2	Thale cress	nucleus	37.58	38.89
VIT_05s0029g00410.t01	Wine grape	nucleus	37.58	37.21
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	18.79	28.0
TraesCS3D01G239800.1	Wheat	nucleus	18.79	28.0
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	18.12	27.41
TraesCS3D01G278900.1	Wheat	nucleus	17.79	25.48
AT4G13885.1	Thale cress	nucleus	22.48	25.48
TraesCS7D01G297900.1	Wheat	cytosol	15.1	24.06
TraesCS1D01G315900.1	Wheat	mitochondrion	15.44	23.12
TraesCS3D01G239600.1	Wheat	cytosol	16.11	20.34
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	15.44	8.0

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF19
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS2D01G012000	EnsemblPlants:TraesCS2D01G012000.1
TIGR:cd06141	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:5728121..5730271

Molecular Weight (calculated)

33061.6 Da

IEP (calculated)

5.780

GRAVY (calculated)

-0.268

Length

298 amino acids

Sequence
(BLAST)

001: MEPAAPPALP CPVDDDDDFY WDAEAEAELQ AIEAAYAAES AKRRRLPDWS KTPAAPAPAP VRPRPNPVPA AASASSPSWV LSPPTCQGSV KARYQQVSFS
101: GKIVYCRTGA EVEKATREIV RKIESMKASG PVSLGFDLEW KPFPRRGEPP CKVALMQLCL DKTHCYLMHI IHSGVPPILK SLLEDSSSVK VGVCIDNDAR
201: KMFNDYEVHV QPLMDLSTVA NVKLAGTYKR WSLAALTEMI TCKELPKPGN IRMGNWESFV LSKKQLEYAA TDAYISWYLY EVLRSLPDYT PDIETEVV

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.