Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 95.48 | 93.69 |
Os07t0112400-00 | Rice | mitochondrion | 41.39 | 47.98 |
TraesCS1D01G315900.1 | Wheat | mitochondrion | 16.17 | 46.73 |
EER95744 | Sorghum | nucleus | 38.96 | 46.0 |
KRH36952 | Soybean | cytosol | 13.39 | 37.38 |
TraesCS7D01G297900.1 | Wheat | cytosol | 11.48 | 35.29 |
TraesCS3D01G239900.1 | Wheat | cytosol, nucleus, plastid | 12.0 | 35.03 |
CDY50548 | Canola | cytosol | 12.52 | 32.14 |
Bra038717.1-P | Field mustard | cytosol | 12.52 | 32.14 |
TraesCS3D01G278900.1 | Wheat | nucleus | 11.48 | 31.73 |
AT3G12460.1 | Thale cress | cytosol, nucleus, plastid | 13.04 | 30.99 |
Bra038723.1-P | Field mustard | cytosol | 11.83 | 30.91 |
KRH11911 | Soybean | nucleus | 12.17 | 30.7 |
CDY50341 | Canola | cytosol | 11.65 | 30.45 |
Bra038722.1-P | Field mustard | cytosol | 11.48 | 30.41 |
AT3G12470.1 | Thale cress | mitochondrion | 11.3 | 29.55 |
TraesCS3D01G239800.1 | Wheat | nucleus | 10.26 | 29.5 |
AT2G36110.1 | Thale cress | mitochondrion | 12.17 | 29.29 |
TraesCS3D01G118000.1 | Wheat | nucleus, peroxisome, plastid | 10.09 | 29.0 |
CDY71159 | Canola | cytosol | 12.52 | 28.12 |
CDY50340 | Canola | nucleus | 8.0 | 27.88 |
Bra038721.1-P | Field mustard | plastid | 8.87 | 27.87 |
AT3G12410.1 | Thale cress | plastid | 11.13 | 27.83 |
AT3G12430.1 | Thale cress | cytosol, nucleus, plastid | 11.48 | 27.73 |
GSMUA_Achr1P12990_001 | Banana | plastid | 8.87 | 26.84 |
AT3G12420.1 | Thale cress | cytosol | 8.0 | 24.86 |
TraesCS3D01G239600.1 | Wheat | cytosol | 10.09 | 24.58 |
CDY50339 | Canola | plastid | 7.13 | 22.91 |
CDY50545 | Canola | cytosol, nucleus, plastid | 9.22 | 22.84 |
AT3G12440.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 11.48 | 18.7 |
TraesCS2D01G012000.1 | Wheat | nucleus | 8.0 | 15.44 |
Protein Annotations
InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF33 |
InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SUPFAM:SSF53098 | EnsemblPlantsGene:TraesCS2D01G261700 | EnsemblPlants:TraesCS2D01G261700.1 | TIGR:cd06141 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:318257813..318259540
Molecular Weight (calculated)
62286.8 Da
IEP (calculated)
4.516
GRAVY (calculated)
-0.340
Length
575 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATPVATRL RRSTPEHDAY TVRVADRRLV ALATGHPADA RRWIYTTRWL HEALLRSGRL VVQWTPVRGR GEGPQTPPPA TLQLCAGHRC LVFHLAQVDA
101: EAVPAVLYRF LADPRVVFVG YGSSYDRRML WDHYGLDVAS ACDLRALTGM GNASVELMAQ RFLGYRGISK PRDVAMSAWH APRLSAEQVE YACVDAYLAF
201: RLGLLLCPGG YQPVQRAPAF PRAPPRAPVI AHAPPPAPAF LELHRAPGPA LVRPRAPPPA PRAPVRPRAP PPAPRALMIP RAQPPAPRAP VRPRAPPPAR
301: RAIMVPRALP PAPRAPVTPC LLSPTRRAAV NPHTPEPHLA LAPTAVAVDT AESSSKVAAL PGFTGSDTDA ELGGLGLVRS NYVYASDDDD GLSSDGYEVV
401: GRGAVTDEDE EEEDVYDYVA RTGLLSDGDY VVGPGIQSDE DEEDGYEGYF LGTGTLNAED VGEQGYAYKE YAGIGILTVE EGHNEYTGIL TVGNEAAAYE
501: DEVFVSNLHA TVVEVEVEES GLQLDVYQEP PECYDNSIEA FQVGDDGYGQ DDGGDWYDQG DDGYVQDDDS YDAFY
101: EAVPAVLYRF LADPRVVFVG YGSSYDRRML WDHYGLDVAS ACDLRALTGM GNASVELMAQ RFLGYRGISK PRDVAMSAWH APRLSAEQVE YACVDAYLAF
201: RLGLLLCPGG YQPVQRAPAF PRAPPRAPVI AHAPPPAPAF LELHRAPGPA LVRPRAPPPA PRAPVRPRAP PPAPRALMIP RAQPPAPRAP VRPRAPPPAR
301: RAIMVPRALP PAPRAPVTPC LLSPTRRAAV NPHTPEPHLA LAPTAVAVDT AESSSKVAAL PGFTGSDTDA ELGGLGLVRS NYVYASDDDD GLSSDGYEVV
401: GRGAVTDEDE EEEDVYDYVA RTGLLSDGDY VVGPGIQSDE DEEDGYEGYF LGTGTLNAED VGEQGYAYKE YAGIGILTVE EGHNEYTGIL TVGNEAAAYE
501: DEVFVSNLHA TVVEVEVEES GLQLDVYQEP PECYDNSIEA FQVGDDGYGQ DDGGDWYDQG DDGYVQDDDS YDAFY
001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.