Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G12460.1 | Thale cress | cytosol, nucleus, plastid | 63.48 | 60.33 |
| AT3G12430.1 | Thale cress | cytosol, nucleus, plastid | 60.43 | 58.4 |
| AT3G12470.1 | Thale cress | mitochondrion | 55.22 | 57.73 |
| AT3G12420.1 | Thale cress | cytosol | 45.22 | 56.22 |
| AT2G36110.1 | Thale cress | mitochondrion | 51.3 | 49.37 |
| KRH36952 | Soybean | cytosol | 37.39 | 41.75 |
| AT3G12440.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 61.3 | 39.94 |
| KRH11911 | Soybean | nucleus | 39.13 | 39.47 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 25.22 | 29.15 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 24.78 | 28.64 |
| Os07t0112300-00 | Rice | mitochondrion | 14.35 | 28.45 |
| EES02313 | Sorghum | mitochondrion, plastid | 29.57 | 28.1 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 21.3 | 25.79 |
| Zm00001d018645_P001 | Maize | mitochondrion | 26.96 | 22.88 |
| OQU88309 | Sorghum | mitochondrion | 22.17 | 20.9 |
| Os07t0112400-00 | Rice | mitochondrion | 30.0 | 13.91 |
| AT4G13870.2 | Thale cress | nucleus | 17.39 | 13.89 |
| EER95744 | Sorghum | nucleus | 29.13 | 13.76 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 29.13 | 11.43 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 27.83 | 11.13 |
| AT4G13885.1 | Thale cress | nucleus | 10.87 | 9.51 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.2 | EntrezGene:820420 | UniProt:A0A178V8Z0 | ProteinID:AAG51022.1 | ProteinID:AEE75194.1 |
| EMBL:AK176143 | ArrayExpress:AT3G12410 | EnsemblPlantsGene:AT3G12410 | RefSeq:AT3G12410 | TAIR:AT3G12410 | RefSeq:AT3G12410-TAIR-G |
| EnsemblPlants:AT3G12410.1 | TAIR:AT3G12410.1 | Unigene:At.50891 | ProteinID:BAB03148.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016787 | GO:GO:0090305 | InterPro:IPR036397 | RefSeq:NP_187847.1 |
| ProteinID:OAP01473.1 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF8 | UniProt:Q9LHG7 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SUPFAM:SSF53098 | UniParc:UPI00000A8C80 | : | : | : | : |
Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
Coordinates
chr3:-:3946036..3947039
Molecular Weight (calculated)
26482.2 Da
IEP (calculated)
4.336
GRAVY (calculated)
-0.182
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.