Factsheet for TraesCS2A01G262300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	93.69	95.48
Os07t0112400-00	Rice	mitochondrion	42.15	49.8
EER95744	Sorghum	nucleus	39.93	48.05
TraesCS1A01G315700.1	Wheat	mitochondrion	15.7	46.23
KRH36952	Soybean	cytosol	13.65	38.84
TraesCS3A01G278600.1	Wheat	cytosol	11.95	36.46
TraesCS3A01G239600.1	Wheat	cytosol	12.12	36.04
TraesCS7A01G302600.1	Wheat	cytosol	12.63	35.41
TraesCS4A01G026000.1	Wheat	cytosol	11.26	34.55
TraesCS5A01G007100.1	Wheat	cytosol	11.77	34.33
CDY50548	Canola	cytosol	12.63	33.04
Bra038717.1-P	Field mustard	cytosol	12.63	33.04
KRH11911	Soybean	nucleus	12.63	32.46
Bra038723.1-P	Field mustard	cytosol	12.12	32.27
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	13.14	31.82
CDY50341	Canola	cytosol	11.95	31.82
Bra038722.1-P	Field mustard	cytosol	11.77	31.8
TraesCS3A01G239500.1	Wheat	nucleus	10.75	31.5
TraesCS6A01G390200.1	Wheat	nucleus	10.58	31.31
AT3G12470.1	Thale cress	mitochondrion	11.6	30.91
TraesCS3A01G116100.1	Wheat	mitochondrion, nucleus, plastid	10.58	30.85
AT2G36110.1	Thale cress	mitochondrion	12.46	30.54
CDY50340	Canola	nucleus	8.36	29.7
CDY71159	Canola	cytosol	12.8	29.3
AT3G12410.1	Thale cress	plastid	11.43	29.13
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	11.77	28.99
GSMUA_Achr1P12990_001	Banana	plastid	9.39	28.95
TraesCS2A01G565200.1	Wheat	cytosol	11.26	28.45
Bra038721.1-P	Field mustard	plastid	8.7	27.87
AT3G12420.1	Thale cress	cytosol	8.36	26.49
CDY50545	Canola	cytosol, nucleus, plastid	9.56	24.14
CDY50339	Canola	plastid	7.0	22.91
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	11.95	19.83
TraesCS2A01G011600.1	Wheat	nucleus	8.36	16.55

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF33
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS2A01G262300	EnsemblPlants:TraesCS2A01G262300.1	TIGR:cd06141
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:413346188..413347948

Molecular Weight (calculated)

63178.7 Da

IEP (calculated)

4.377

GRAVY (calculated)

-0.338

Length

586 amino acids

Sequence
(BLAST)

001: MDATPVATRL RRSTPEHDAY TVRVADRRLV ALATGHPADA RRWIYTTRWL HQALLRSGRL VVGLGVQWTP VRDRGEGPLT PPPATLQLCA GHRCLVFHLA
101: QVDAEAVPAV LYRFLADPRV VFVGYGSSYD RRMLWDHYGL DVASACDLRA LTGMGNASVE LMAQRFLGYR GISKPRDVAM SAWHAPRLSV EQVEYACVDA
201: YLAFRLGLLL CPGGYQPVQR APAFPRAPPP APRALVIAHA PPPAPAFLEL HRAPGPALVR SRAPPPAPRA PVRPRAPPPA PRALMIPRVQ PPAPRAPVRP
301: RAPPPAPRAI MIPRAPPAAP RAPVTPCLLS PTPRAAVNPH TPEPHLALAP TAVAVGTAES SSKVAALPGL TGSDTDTDTE AELGGLSLVR SNYASDDDDD
401: DDLSFSSDGY EVVGRGAVTD EDEEEEDVYD YVARTGLLSD GDYVVGPGIQ SDDDEEDGYE GYVLGTGTLN AEDVGEQGYA YKEYAGIGIL TVEEGHNEYT
501: GILTVGNEAA AYEDEVFVSN LHATVVEVEE SGLQLDVYQE PPECYDNSIE AFQGGDDGYG QDDGGDWYDQ GDDGYEQDDD SYDAFY

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.