Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50340 | Canola | nucleus | 71.43 | 93.94 |
| Bra038723.1-P | Field mustard | cytosol | 75.58 | 74.55 |
| Bra038721.1-P | Field mustard | plastid | 51.15 | 60.66 |
| Bra038717.1-P | Field mustard | cytosol | 56.68 | 54.91 |
| KRH36952 | Soybean | cytosol | 37.79 | 39.81 |
| KRH11911 | Soybean | nucleus | 39.17 | 37.28 |
| Os07t0112300-00 | Rice | mitochondrion | 16.59 | 31.03 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 27.65 | 30.15 |
| TraesCS1D01G315900.1 | Wheat | mitochondrion | 27.65 | 30.15 |
| EES02313 | Sorghum | mitochondrion, plastid | 31.34 | 28.1 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 20.74 | 23.68 |
| Zm00001d018645_P001 | Maize | mitochondrion | 28.11 | 22.51 |
| OQU88309 | Sorghum | mitochondrion | 24.42 | 21.72 |
| Bra032748.1-P | Field mustard | nucleus | 20.28 | 15.88 |
| EER95744 | Sorghum | nucleus | 29.95 | 13.35 |
| Os07t0112400-00 | Rice | mitochondrion | 29.95 | 13.1 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 31.8 | 11.77 |
| TraesCS2D01G261700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.41 | 11.48 |
| TraesCS2B01G279800.1 | Wheat | mitochondrion, plastid | 0.92 | 0.66 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | EnsemblPlantsGene:Bra038722 | EnsemblPlants:Bra038722.1 | EnsemblPlants:Bra038722.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 |
| InterPro:IPR036397 | UniProt:M4FCA6 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF8 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SMART:SM00474 | SUPFAM:SSF53098 | UniParc:UPI000254523C | : | : | : |
Description
AT3G12470 (E=3e-056) | nucleic acid binding
Coordinates
chrA01:+:26432961..26433614
Molecular Weight (calculated)
25212.3 Da
IEP (calculated)
8.858
GRAVY (calculated)
-0.271
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTIKTMGE YKSHQVYFID FFGQNLDVTQ TETPSIIRRW IRDILYRHRR SRCSHPLVVG VGVQWTPSWY FSPPAYDRAA DTLQLCVGTS VLIVQLSYCQ
101: RVPNILRRFL TNPDTTFVGF WNSQDVRKLE ITRHRLEIGE LLDVRKYLAD QQGRSLRGRS FEGIVEECMG LEGVKLDRKI SKSDWSVDYL SKEQLVQVSV
201: DAYVSFKLGV DARLWEV
101: RVPNILRRFL TNPDTTFVGF WNSQDVRKLE ITRHRLEIGE LLDVRKYLAD QQGRSLRGRS FEGIVEECMG LEGVKLDRKI SKSDWSVDYL SKEQLVQVSV
201: DAYVSFKLGV DARLWEV
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.