Factsheet for Zm00001d018645_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G315900.1	Wheat	mitochondrion	39.48	53.77
OQU88309	Sorghum	mitochondrion	48.34	53.69
Os07t0112300-00	Rice	mitochondrion	21.4	50.0
TraesCS1A01G315700.1	Wheat	mitochondrion	36.53	49.75
TraesCS1B01G327900.1	Wheat	mitochondrion	36.16	49.25
KRH36952	Soybean	cytosol	25.09	33.01
Zm00001d011507_P001	Maize	cytosol	24.35	32.67
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	23.99	32.5
Zm00001d009130_P001	Maize	nucleus	23.99	30.37
Bra038717.1-P	Field mustard	cytosol	25.09	30.36
CDY50548	Canola	cytosol	24.72	29.91
KRH11911	Soybean	nucleus	25.09	29.82
Bra038723.1-P	Field mustard	cytosol	23.99	29.55
CDY50341	Canola	cytosol	23.99	29.55
Zm00001d043554_P001	Maize	cytosol	21.77	28.92
Bra038722.1-P	Field mustard	cytosol	22.51	28.11
AT3G12410.1	Thale cress	plastid	22.88	26.96
GSMUA_Achr1P12990_001	Banana	plastid	18.82	26.84
CDY71159	Canola	cytosol	25.09	26.56
Bra038721.1-P	Field mustard	plastid	17.71	26.23
AT2G36110.1	Thale cress	mitochondrion	22.88	25.94
AT3G12470.1	Thale cress	mitochondrion	21.03	25.91
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	22.88	25.62
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	22.14	25.21
CDY50340	Canola	nucleus	14.76	24.24
AT3G12420.1	Thale cress	cytosol	16.24	23.78
CDY50545	Canola	cytosol, nucleus, plastid	19.56	22.84
CDY50339	Canola	plastid	13.28	20.11
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	25.09	19.26
Zm00001d047288_P001	Maize	nucleus	14.02	18.81
Zm00001d036734_P001	Maize	nucleus	16.24	16.36
Zm00001d004468_P003	Maize	nucleus	17.71	15.84
Zm00001d022094_P001	Maize	nucleus	21.4	13.74
Zm00001d011513_P001	Maize	plastid	21.4	13.3
Zm00001d010107_P001	Maize	nucleus	21.03	5.54

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	UniProt:A0A1D6HR85	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397
ProteinID:ONM51024.1	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
SUPFAM:SSF53098	UniParc:UPI0008424B1F	EnsemblPlantsGene:Zm00001d018645	EnsemblPlants:Zm00001d018645_P001	EnsemblPlants:Zm00001d018645_T001	SEG:seg

Description

Polynucleotidyl transferase ribonuclease H-like superfamily protein

Coordinates

chr7:+:1544840..1546170

Molecular Weight (calculated)

29569.9 Da

IEP (calculated)

11.982

GRAVY (calculated)

-0.360

Length

271 amino acids

Sequence
(BLAST)

001: MVARRRKLAV RRSTLSVGGN PVVNTVTARP GVARRWVYTT LWRYRLQHRY SADGLTVGLG VQWTPPFRKL APGAEHRPGT LQMCAGNSCL VFQIACAGGA
101: VPRILRRFLA DARVTFAGRN VAADCRMLRA HHGLDVASTL ELRRGGGGGG RQSLAEMAER LLGIPRGLVE KPQWVGMSKW DRRRLSPAQE RYAAVDANIV
201: SNLRHRLDGR CGGGQADGIC ATGAVSAPHP WLLCTQQGLV RASDARCEGH QPRAAREPSG LRPLRPDPRR G

Best Arabidopsis Sequence Match ( AT3G12460.1 )
(BLAST)

001: MAPTIRTIGS YATQQRYSVD FFGEELFVTV TPDPSVIGQW IHDVFFHNRL SSHPLVVGVG VQWTPSGYHP ASPPVSYRSD SSPDSYRSDS PPVFYSSDPP
101: ADTLQLCVGN RCIIIQLRYC ERVPQVLRNF LADRDNTFVG IWNSQDAGKL ERSRHQLEIA ELMDLREFVS DSSGRRSMYN YSLEKIVEEN LGYPGVRLDR
201: EVSMSDWRVY NLSYDQILQA SIDVYACCSL AILDHLWEEK NR

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.