CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038717.1-P	Field mustard	cytosol	98.66	98.66
CDY71159	Canola	cytosol	87.95	76.95
CDY50341	Canola	cytosol	56.7	57.73
AT3G12430.1	Thale cress	cytosol, nucleus, plastid	60.71	57.14
CDY50340	Canola	nucleus	41.52	56.36
AT3G12460.1	Thale cress	cytosol, nucleus, plastid	58.93	54.55
AT3G12420.1	Thale cress	cytosol	40.62	49.19
CDY50339	Canola	plastid	36.61	45.81
CDY50545	Canola	cytosol, nucleus, plastid	46.43	44.83
KRH36952	Soybean	cytosol	40.18	43.69
KRH11911	Soybean	nucleus	40.18	39.47
AT3G12440.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	58.93	37.39
Os07t0112300-00	Rice	mitochondrion	16.96	32.76
TraesCS1D01G315900.1	Wheat	mitochondrion	27.68	31.16
TraesCS1A01G315700.1	Wheat	mitochondrion	27.23	30.65
EES02313	Sorghum	mitochondrion, plastid	29.91	27.69
Zm00001d018645_P001	Maize	mitochondrion	29.91	24.72
GSMUA_Achr1P12990_001	Banana	plastid	20.54	24.21
OQU88309	Sorghum	mitochondrion	23.66	21.72
CDY01171	Canola	nucleus	19.64	16.0
CDY50420	Canola	nucleus	18.75	15.27
EER95744	Sorghum	nucleus	32.14	14.78
Os07t0112400-00	Rice	mitochondrion	32.14	14.52
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	33.04	12.63
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	32.14	12.52

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	GO:A0A078INE3	UniProt:A0A078INE3	EnsemblPlants:CDY50548
ProteinID:CDY50548	ProteinID:CDY50548.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:GSBRNA2T00096976001	InterPro:IPR036397	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI0004EF1109	:

Description

BnaA01g30620DBnaA01g30620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INE3]

Coordinates

chrLK032922:+:17006..17680

Molecular Weight (calculated)

25878.4 Da

IEP (calculated)

4.390

GRAVY (calculated)

-0.225

Length

224 amino acids

Sequence
(BLAST)

001: MAPTIRTVAT YNTHQEHTVD FFGNEFTVTV TRFSSVITRW INNVQYYNRY SSHPLVIGVG VQWTPIYLCD NCYYADPYYN ADPEADTLQL CVGTRCLVIQ
101: LSHCDDVPDE LRSFLTDPQT VYVGFWNGQD AGKLARSRHG LEIEELLDLR NYVQDSVGFG MSRCSFEEMV EECMGYRGVR LDRGISMSDW SAYELDHEQI
201: LQASVDAYVC FKLGVLVRLW EYYD

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.