CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038721.1-P	Field mustard	plastid	72.63	71.04
CDY50545	Canola	cytosol, nucleus, plastid	73.74	56.9
CDY50340	Canola	nucleus	43.02	46.67
CDY50341	Canola	cytosol	54.75	44.55
CDY50548	Canola	cytosol	45.81	36.61
CDY71159	Canola	cytosol	44.69	31.25
KRH36952	Soybean	cytosol	29.61	25.73
Os07t0112300-00	Rice	mitochondrion	15.64	24.14
KRH11911	Soybean	nucleus	30.17	23.68
GSMUA_Achr1P12990_001	Banana	plastid	17.88	16.84
TraesCS1D01G315900.1	Wheat	mitochondrion	17.88	16.08
TraesCS1A01G315700.1	Wheat	mitochondrion	17.32	15.58
EES02313	Sorghum	mitochondrion, plastid	20.11	14.88
Zm00001d018645_P001	Maize	mitochondrion	20.11	13.28
OQU88309	Sorghum	mitochondrion	17.32	12.7
CDY50420	Canola	nucleus	13.97	9.09
CDY01171	Canola	nucleus	13.97	9.09
EER95744	Sorghum	nucleus	21.23	7.8
Os07t0112400-00	Rice	mitochondrion	21.23	7.66
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	22.91	7.13
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	22.91	7.0

Protein Annotations

EnsemblPlants:CDY50339	EnsemblPlantsGene:GSBRNA2T00096452001	Gene3D:3.30.420.10	GO:A0A078ILU0	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	PANTHER:PTHR13620	PANTHER:PTHR13620:SF8
ProteinID:CDY50339	ProteinID:CDY50339.1	SignalP:SignalP-noTM	SUPFAM:SSF53098	UniParc:UPI0004EF44C7	UniProt:A0A078ILU0
MapMan:35.2	:	:	:	:	:

Description

BnaC01g38340DBnaC01g38340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILU0]

Coordinates

chrLK032902:-:29227..29766

Molecular Weight (calculated)

20182.3 Da

IEP (calculated)

10.103

GRAVY (calculated)

-0.031

Length

179 amino acids

Sequence
(BLAST)

001: MSSSVTVVHA LVTLLSLESA STGHHIGISQ RRRVTTVLWI LSSYAWEHRV SSSSSLTVIK RVPDIIPRFL TDPNTIFVGI RNSQDAKRLA RTRHQLEIGE
101: LLDAGMYVVD SQGRSLRGRS FEEIVEKCMG FRGVKLDRGI SRSDWSVEYL SNDQILQVSV DAYVCFKLGV SARLWQVKF

Best Arabidopsis Sequence Match ( AT3G12440.1 )
(BLAST)

001: MAPRIRSIGS YATQGKFSVD FFGDEFIVTV TSDPSVIGQW IHDVLRFSSR PLVVGVGVQW TPHPTSPPAR YHSPVSYHSD SSPVTHHYDS PPVCYRSDSP
101: PAQYCSVSPP ARYSSDSPPA QYRSVSPPAQ YRSVSPPALY RSVSPPARYR SVSPPVRYRS DSPPAQFRSV SPPARYLSDS PLVRYRSVSP PARYLSVSPP
201: ARYRSVSPPA RSDPPANTLQ LCVGNRCIII QLFYCNRVPH VLRRFLGDRN HTFVGFWNSQ DAGKLKRSRH RLEIAELLDL RNHVVDSRGR GLKGRSFEVV
301: VGECLGYRGV RLEKAIGMSD WSVYDLSYDQ ILQASIDVYV CSKLGFRNRL WEF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG4]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.