CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038723.1-P	Field mustard	cytosol	92.73	92.73
CDY50340	Canola	nucleus	55.45	73.94
CDY50548	Canola	cytosol	57.73	56.7
CDY50545	Canola	cytosol, nucleus, plastid	58.18	55.17
CDY50339	Canola	plastid	44.55	54.75
CDY71159	Canola	cytosol	57.27	49.22
KRH36952	Soybean	cytosol	39.09	41.75
KRH11911	Soybean	nucleus	40.45	39.04
TraesCS1D01G315900.1	Wheat	mitochondrion	28.64	31.66
TraesCS1A01G315700.1	Wheat	mitochondrion	28.64	31.66
EES02313	Sorghum	mitochondrion, plastid	31.36	28.51
Os07t0112300-00	Rice	mitochondrion	14.09	26.72
Zm00001d018645_P001	Maize	mitochondrion	29.55	23.99
GSMUA_Achr1P12990_001	Banana	plastid	19.55	22.63
OQU88309	Sorghum	mitochondrion	25.0	22.54
CDY01171	Canola	nucleus	20.0	16.0
CDY50420	Canola	nucleus	18.64	14.91
EER95744	Sorghum	nucleus	32.73	14.78
Os07t0112400-00	Rice	mitochondrion	31.36	13.91
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	31.82	11.95
TraesCS2D01G261700.1	Wheat	cytosol, mitochondrion, nucleus	30.45	11.65

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	GO:A0A078IK27	UniProt:A0A078IK27	EnsemblPlants:CDY50341
ProteinID:CDY50341	ProteinID:CDY50341.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:GSBRNA2T00096455001	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF8	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI0004EE8B69	SEG:seg

Description

BnaC01g38360DBnaC01g38360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IK27]

Coordinates

chrLK032902:-:32995..33657

Molecular Weight (calculated)

25805.0 Da

IEP (calculated)

9.879

GRAVY (calculated)

-0.357

Length

220 amino acids

Sequence
(BLAST)

001: MAPTIKTIGE YKTHQDYFVD FFGDNLSVTQ TETPSVIRRW IRYVVYRHRR SRSRHPLVVG VGVQWTPRWY FSAPKGYYRP ADTLQLCVGT LCLIIQLSYC
101: KRVPHILRRF LTDPNTTFVG IRNSQDVKRL AKTKHQLEIG EILDVRNYFT LTDWHGRSFR PRSFEEIVET CMGFRGVRLD KNISKSNWSV GYLSQDQLLQ
201: ASVDAYVCFK LGVDARLWED

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.