CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01171	Canola	nucleus	96.73	96.73
AT4G13870.2	Thale cress	nucleus	80.73	77.08
KRH31568	Soybean	mitochondrion	36.36	49.26
KRG97350	Soybean	nucleus	49.82	46.92
PGSC0003DMT400053073	Potato	nucleus	47.64	43.52
Solyc09g092340.2.1	Tomato	nucleus	47.27	43.33
HORVU2Hr1G001690.1	Barley	plastid	36.36	42.92
VIT_05s0029g00410.t01	Wine grape	nucleus	46.55	42.52
Os04t0129200-00	Rice	nucleus	42.18	38.93
TraesCS2B01G010000.1	Wheat	nucleus	40.0	37.29
TraesCS2A01G011600.1	Wheat	nucleus	40.0	37.16
Zm00001d004468_P003	Maize	nucleus	40.73	36.96
TraesCS2D01G012000.1	Wheat	nucleus	39.64	36.58
EES11779	Sorghum	nucleus	40.73	36.01
AT4G13885.1	Thale cress	nucleus	33.09	34.6
GSMUA_AchrUn_...	Banana	nucleus	34.91	33.45
CDY50548	Canola	cytosol	15.27	18.75
CDY50341	Canola	cytosol	14.91	18.64
CDY50340	Canola	nucleus	10.91	18.18
CDY71159	Canola	cytosol	14.55	15.62
CDY50545	Canola	cytosol, nucleus, plastid	12.73	15.09
CDY50339	Canola	plastid	9.09	13.97

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:A0A078IHI3	UniProt:A0A078IHI3	EnsemblPlants:CDY50420
ProteinID:CDY50420	ProteinID:CDY50420.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	EnsemblPlantsGene:GSBRNA2T00096660001	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF19	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI0004EE64CD
SEG:seg	:	:	:	:	:

Description

BnaCnng19290DBnaCnng19290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IHI3]

Coordinates

chrLK032908:-:17294..19545

Molecular Weight (calculated)

30655.6 Da

IEP (calculated)

8.336

GRAVY (calculated)

-0.359

Length

275 amino acids

Sequence
(BLAST)

001: MMLSSWGDEE EFTEEDLLAI EAIEASHLSQ SSSSSSSSTV RPANSNPNQI RRQLPRSITS PTPSKRFPLS RCRAKNFPAM RFGGRILYSK TASEVDRRAM
101: QLLKVLDTKK DHSGRAFIGF DIEWRPSFRK GVLPGKVAVV QICVDNSYCD VMQITHSGIP QSLQHLIEDS SLVKVGIGID GDSVKLFHDH GVSIKDVEDL
201: SDLANKKIGG GLKKWGLASL TETLVCKELL KPHRIRLGNW EVRPLSKEQL QYAATDAYAS WHLYHVLKDL PDAVD

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.