CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97350	Soybean	nucleus	86.21	59.93
HORVU2Hr1G001690.1	Barley	plastid	41.87	36.48
CDY50420	Canola	nucleus	49.26	36.36
VIT_05s0029g00410.t01	Wine grape	nucleus	53.69	36.21
CDY01171	Canola	nucleus	48.77	36.0
Bra032748.1-P	Field mustard	nucleus	48.77	35.74
Solyc09g092340.2.1	Tomato	nucleus	50.74	34.33
PGSC0003DMT400053073	Potato	nucleus	50.25	33.89
AT4G13870.2	Thale cress	nucleus	47.29	33.33
TraesCS2A01G011600.1	Wheat	nucleus	43.35	29.73
TraesCS2B01G010000.1	Wheat	nucleus	42.86	29.49
TraesCS2D01G012000.1	Wheat	nucleus	42.86	29.19
Zm00001d004468_P003	Maize	nucleus	43.35	29.04
EES11779	Sorghum	nucleus	42.86	27.97
Os04t0129200-00	Rice	nucleus	40.39	27.52
GSMUA_AchrUn_...	Banana	nucleus	32.51	23.0
KRH49260	Soybean	cytosol, nucleus, peroxisome	23.15	22.17
KRH00115	Soybean	nucleus	23.15	22.07
KRH00114	Soybean	cytosol	23.65	21.24
KRH00112	Soybean	nucleus	20.69	21.0
KRH00116	Soybean	cytosol	21.67	20.85
KRH49255	Soybean	nucleus	24.14	20.59
AT4G13885.1	Thale cress	nucleus	25.62	19.77
KRH26003	Soybean	nucleus	20.2	19.71
KRH63674	Soybean	cytosol	13.3	16.36
KRH36952	Soybean	cytosol	12.81	12.62
KRH11911	Soybean	nucleus	13.3	11.84

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	UniProt:A0A0R0HM63	EMBL:ACUP02007146	EnsemblPlantsGene:GLYMA_11G254800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR036397	EnsemblPlants:KRH31568	ProteinID:KRH31568	ProteinID:KRH31568.1	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF19	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	UniParc:UPI0006EDBB3E

Description

hypothetical protein

Coordinates

chr11:+:34507187..34510099

Molecular Weight (calculated)

23042.0 Da

IEP (calculated)

9.783

GRAVY (calculated)

-0.271

Length

203 amino acids

Sequence
(BLAST)

001: MTMRPLLTLS YFPNYTSLRM ESVHPTIRLP LMKFSGQIFY IRTFDAVEKA ATKLLQILQE MMQIAIGFDI EWKPTFRKGV PPGKVAVMQI YGDTRHCHVG
101: AGIDGDAVKV FRDYNISVKG VTDLSFHANR KLGGDHKWGL ASLTEKLLSK QLKKPNKIRL GNWETPVLSK EQLEYAATDA FASWYLYQKV TDRSGEVDGV
201: PQE

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.