CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49260	Soybean	cytosol, nucleus, peroxisome	66.67	66.98
KRH00116	Soybean	cytosol	54.46	54.98
KRH00114	Soybean	cytosol	54.46	51.33
Os01t0660800-01	Rice	nucleus	44.6	47.74
EES03384	Sorghum	nucleus	45.07	47.52
Zm00001d011507_P001	Maize	cytosol	44.13	46.53
TraesCS7B01G202700.1	Wheat	cytosol	43.66	44.71
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	41.31	44.67
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	41.31	44.67
TraesCS3A01G239600.1	Wheat	cytosol	41.31	44.67
TraesCS7A01G302600.1	Wheat	cytosol	43.66	44.5
TraesCS5A01G007100.1	Wheat	cytosol	41.78	44.28
TraesCS3A01G239500.1	Wheat	nucleus	41.31	44.0
TraesCS3A01G278600.1	Wheat	cytosol	39.44	43.75
Os01t0737600-00	Rice	cytosol	42.72	43.75
KRH49255	Soybean	nucleus	48.83	43.7
Zm00001d043554_P001	Maize	cytosol	41.78	43.63
Os04t0225100-01	Rice	cytosol	43.19	43.6
TraesCS4A01G026000.1	Wheat	cytosol	38.97	43.46
PGSC0003DMT400094103	Potato	mitochondrion	43.19	43.19
TraesCS3D01G239800.1	Wheat	nucleus	40.38	43.0
EES01442	Sorghum	nucleus	41.78	42.79
EES01443	Sorghum	cytosol	40.38	42.36
Solyc01g103460.2.1	Tomato	cytosol	42.25	42.25
HORVU7Hr1G071770.1	Barley	cytosol	41.78	41.98
VIT_08s0040g00710.t01	Wine grape	cytosol	40.85	41.83
TraesCS3D01G278900.1	Wheat	nucleus	40.85	41.83
TraesCS3B01G312800.1	Wheat	nucleus	40.85	41.83
EES03385	Sorghum	cytosol, nucleus, plastid	39.44	41.79
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	38.97	41.5
EES01441	Sorghum	cytosol, nucleus, plastid	40.85	41.43
PGSC0003DMT400064032	Potato	nucleus	41.78	41.4
TraesCS7D01G297900.1	Wheat	cytosol	36.15	41.18
TraesCS6B01G430200.1	Wheat	cytosol	38.5	41.0
Solyc11g006480.1.1	Tomato	nucleus	33.8	40.68
TraesCS6A01G390200.1	Wheat	nucleus	37.56	40.4
OQU87276	Sorghum	nucleus	41.31	38.94
TraesCS2B01G625700.1	Wheat	cytosol	42.25	38.63
HORVU3Hr1G069990.1	Barley	nucleus	40.85	37.99
Os01t0737700-00	Rice	nucleus	41.31	37.61
TraesCS2A01G565200.1	Wheat	cytosol	40.85	37.5
EES03381	Sorghum	nucleus	39.44	37.17
HORVU0Hr1G006750.1	Barley	nucleus	35.21	37.13
KXG33324	Sorghum	cytosol	34.27	37.06
GSMUA_Achr1P12990_001	Banana	plastid	31.92	35.79
Os11t0222320-00	Rice	cytosol, nucleus	22.54	35.56
KRH26003	Soybean	nucleus	32.86	33.65
TraesCS3D01G239600.1	Wheat	cytosol	35.68	32.2
KRH36952	Soybean	cytosol	30.99	32.04
KRH00112	Soybean	nucleus	30.05	32.0
TraesCS3B01G267900.1	Wheat	cytosol	36.15	31.3
KRH63674	Soybean	cytosol	23.0	29.7
KRH11911	Soybean	nucleus	28.17	26.32
Zm00001d047288_P001	Maize	nucleus	22.54	23.76
KRH31568	Soybean	mitochondrion	22.07	23.15
Os01t0660500-00	Rice	mitochondrion	39.91	21.74
Zm00001d011513_P001	Maize	plastid	41.31	20.18
KRG97350	Soybean	nucleus	26.29	19.18
Zm00001d036734_P001	Maize	nucleus	23.47	18.59
Zm00001d022094_P001	Maize	nucleus	29.11	14.69
Zm00001d010107_P001	Maize	nucleus	28.64	5.93

Protein Annotations

EntrezGene:100811934	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EMBL:ACUP02011383	EnsemblPlantsGene:GLYMA_18G194400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397
UniProt:K7MTD2	EnsemblPlants:KRH00115	ProteinID:KRH00115	ProteinID:KRH00115.1	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	UniParc:UPI000233E3FC	:

Description

hypothetical protein

Coordinates

chr18:-:46752736..46753377

Molecular Weight (calculated)

23934.8 Da

IEP (calculated)

9.225

GRAVY (calculated)

-0.108

Length

213 amino acids

Sequence
(BLAST)

001: MSMTTTLIRE NGIGNNNYKS YEVKMGTHTI QTLVTTSPCQ VGIWLSTNTR NTHDNLKIVG LDVEWRPNTQ SNSQQPNPVA TLQLCIDHNC LIFQILHATL
101: VPRALTSFLA NRHVKFVGVG VRDDAQKLLR DYNLHVANAV DLRSLAEQKL KVFWLGSAGL AALGRFFLGV DINKPHHITT SLWDNRFLTH EQVQYATIDA
201: FVSSEIGRRI LIS

Best Arabidopsis Sequence Match ( AT4G13870.2 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKVLKD LPDAVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.