Factsheet for TraesCS2B01G625700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G565200.1	Wheat	cytosol	86.27	86.64
TraesCS7B01G202700.1	Wheat	cytosol	69.1	77.4
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	59.23	70.05
Os01t0660800-01	Rice	nucleus	55.36	64.82
Zm00001d011507_P001	Maize	cytosol	54.08	62.38
EES03384	Sorghum	nucleus	53.22	61.39
TraesCS3B01G312800.1	Wheat	nucleus	46.78	52.4
VIT_08s0040g00710.t01	Wine grape	cytosol	42.92	48.08
TraesCS6B01G430200.1	Wheat	cytosol	41.2	48.0
Solyc10g078200.1.1	Tomato	nucleus	41.2	46.83
PGSC0003DMT400093830	Potato	cytosol	40.34	45.85
KRH00115	Soybean	nucleus	38.63	42.25
Solyc08g078620.1.1	Tomato	mitochondrion	37.34	42.03
PGSC0003DMT400064032	Potato	nucleus	38.63	41.86
PGSC0003DMT400075613	Potato	nucleus	39.06	41.36
Solyc01g103460.2.1	Tomato	cytosol	37.77	41.31
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	34.76	40.5
Solyc12g094540.1.1	Tomato	cytosol	35.19	40.2
PGSC0003DMT400094103	Potato	mitochondrion	36.48	39.91
PGSC0003DMT400036459	Potato	extracellular	36.91	39.81
KRH49260	Soybean	cytosol, nucleus, peroxisome	36.05	39.62
Solyc11g006480.1.1	Tomato	nucleus	30.04	39.55
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	39.48	39.48
Solyc08g007350.1.1	Tomato	cytosol	39.48	39.15
KRH00116	Soybean	cytosol	35.19	38.86
TraesCS3B01G267900.1	Wheat	cytosol	40.34	38.21
GSMUA_Achr1P12990_001	Banana	plastid	30.9	37.89
Solyc12g042390.1.1	Tomato	cytosol	35.19	37.79
KRH00114	Soybean	cytosol	36.48	37.61
PGSC0003DMT400032554	Potato	cytosol	39.48	36.51
KRH49255	Soybean	nucleus	35.19	34.45
TraesCS1B01G327900.1	Wheat	mitochondrion	27.04	31.66
KRH00112	Soybean	nucleus	26.61	31.0
TraesCS2B01G010000.1	Wheat	nucleus	24.46	19.32
TraesCS2B01G279800.1	Wheat	mitochondrion, plastid	0.43	0.33

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS2B01G625700	EnsemblPlants:TraesCS2B01G625700.1
TIGR:cd06141	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:798294672..798295373

Molecular Weight (calculated)

26321.7 Da

IEP (calculated)

4.659

GRAVY (calculated)

-0.344

Length

233 amino acids

Sequence
(BLAST)

001: MGTETFVTDV AFEDDVISTT VTSSGDAVVA WLRRIRHAYR WVYHKLIVGL DVEWRPSFCR VHNRVALLQL CVGRRCLIFP LLHADYVPRA LESFLADRDF
101: RFVGVGVQDD ANRLSNDHGL VVNNTVDLRG LAADGMGRPW LRQAGLKDIM GAVMGANLKK PQRVRTGAWD AHRFSHEQIK YACIDAFVSF EVGRKLLTGD
201: YSCSSSSDDD EEEEEEEDDS YSSDEYGSSE EDY

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.