Factsheet for Solyc01g103460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064032	Potato	nucleus	87.79	86.98
Solyc11g006480.1.1	Tomato	nucleus	48.36	58.19
VIT_08s0040g00710.t01	Wine grape	cytosol	50.7	51.92
Solyc10g078200.1.1	Tomato	nucleus	46.01	47.8
KRH49260	Soybean	cytosol, nucleus, peroxisome	45.54	45.75
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	42.25	45.0
KRH00116	Soybean	cytosol	44.13	44.55
TraesCS5A01G007100.1	Wheat	cytosol	41.78	44.28
TraesCS7A01G302600.1	Wheat	cytosol	43.19	44.02
HORVU7Hr1G071770.1	Barley	cytosol	43.66	43.87
Solyc12g094540.1.1	Tomato	cytosol	41.78	43.63
Zm00001d011507_P001	Maize	cytosol	41.31	43.56
EES03385	Sorghum	cytosol, nucleus, plastid	40.85	43.28
TraesCS7B01G202700.1	Wheat	cytosol	42.25	43.27
Os01t0660800-01	Rice	nucleus	40.38	43.22
TraesCS6B01G430200.1	Wheat	cytosol	40.38	43.0
Solyc12g042390.1.1	Tomato	cytosol	43.66	42.86
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	39.44	42.64
KRH00115	Soybean	nucleus	42.25	42.25
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	38.97	42.13
TraesCS3A01G239600.1	Wheat	cytosol	38.97	42.13
EES03384	Sorghum	nucleus	39.91	42.08
TraesCS4A01G026000.1	Wheat	cytosol	37.56	41.88
Os01t0737600-00	Rice	cytosol	40.38	41.35
TraesCS7D01G297900.1	Wheat	cytosol	36.15	41.18
TraesCS3B01G312800.1	Wheat	nucleus	39.91	40.87
TraesCS3D01G278900.1	Wheat	nucleus	39.91	40.87
EES01442	Sorghum	nucleus	39.91	40.87
KRH49255	Soybean	nucleus	45.54	40.76
TraesCS3A01G278600.1	Wheat	cytosol	36.62	40.62
TraesCS3A01G239500.1	Wheat	nucleus	38.03	40.5
KRH00114	Soybean	cytosol	42.72	40.27
TraesCS6A01G390200.1	Wheat	nucleus	37.09	39.9
TraesCS2A01G565200.1	Wheat	cytosol	43.19	39.66
EES01441	Sorghum	cytosol, nucleus, plastid	38.97	39.52
Zm00001d043554_P001	Maize	cytosol	37.56	39.22
Solyc08g078620.1.1	Tomato	mitochondrion	38.03	39.13
TraesCS3D01G239800.1	Wheat	nucleus	36.62	39.0
Os04t0225100-01	Rice	cytosol	38.5	38.86
EES01443	Sorghum	cytosol	36.62	38.42
TraesCS2B01G625700.1	Wheat	cytosol	41.31	37.77
HORVU3Hr1G069990.1	Barley	nucleus	40.38	37.55
OQU87276	Sorghum	nucleus	39.44	37.17
KXG33324	Sorghum	cytosol	34.27	37.06
EES03381	Sorghum	nucleus	38.97	36.73
Solyc01g100670.1.1	Tomato	cytosol	28.17	36.59
Os01t0737700-00	Rice	nucleus	39.91	36.32
GSMUA_Achr1P12990_001	Banana	plastid	32.39	36.32
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	22.07	36.15
TraesCS3D01G239600.1	Wheat	cytosol	39.91	36.02
HORVU0Hr1G006750.1	Barley	nucleus	32.86	34.65
TraesCS3B01G267900.1	Wheat	cytosol	39.91	34.55
Solyc01g100680.1.1	Tomato	plastid	32.39	34.16
KRH00112	Soybean	nucleus	31.46	33.5
Solyc08g007350.1.1	Tomato	cytosol	36.62	33.19
Os11t0222320-00	Rice	cytosol, nucleus	20.19	31.85
Zm00001d047288_P001	Maize	nucleus	23.0	24.26
Zm00001d036734_P001	Maize	nucleus	26.29	20.82
Os01t0660500-00	Rice	mitochondrion	36.15	19.69
Zm00001d011513_P001	Maize	plastid	38.97	19.04
Solyc09g092340.2.1	Tomato	nucleus	25.35	18.0
Zm00001d022094_P001	Maize	nucleus	30.99	15.64
Zm00001d010107_P001	Maize	nucleus	30.05	6.22

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	UniProt:K4B1S2	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc01g103460.2
EnsemblPlants:Solyc01g103460.2.1	UniParc:UPI00027683FC	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:92067930..92069003

Molecular Weight (calculated)

24818.7 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.331

Length

213 amino acids

Sequence
(BLAST)

001: MDVQLIEYKL TCNCNHRIYN VILDDTEIET SVTVDPCSVA SWIRKIETQN RSRLHRLIVG LDIEWRPKSN PVADRNPVAT IQLCVGKSCL IYQVLHSRHI
101: PRRLRHFLNN DDYTFVGVGI RSDVDKLWED YNLEVSDIVD LREWAAEELN KKKLLNSGLK HLGRKIAGIE IEKPKSVTTS DWDERWLSRE QICYACLDAY
201: ISFEVGRVLS AWY

Best Arabidopsis Sequence Match ( AT3G12460.1 )
(BLAST)

001: MAPTIRTIGS YATQQRYSVD FFGEELFVTV TPDPSVIGQW IHDVFFHNRL SSHPLVVGVG VQWTPSGYHP ASPPVSYRSD SSPDSYRSDS PPVFYSSDPP
101: ADTLQLCVGN RCIIIQLRYC ERVPQVLRNF LADRDNTFVG IWNSQDAGKL ERSRHQLEIA ELMDLREFVS DSSGRRSMYN YSLEKIVEEN LGYPGVRLDR
201: EVSMSDWRVY NLSYDQILQA SIDVYACCSL AILDHLWEEK NR

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.