Factsheet for Solyc01g100670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092627	Potato	nucleus	90.24	71.84
Solyc01g100680.1.1	Tomato	plastid	77.44	62.87
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	34.15	43.08
KRH26003	Soybean	nucleus	51.22	40.38
KRH63674	Soybean	cytosol	36.59	36.36
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	43.29	35.5
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	43.29	35.5
TraesCS3A01G116100.1	Wheat	mitochondrion, nucleus, plastid	42.07	34.33
Zm00001d009130_P001	Maize	nucleus	43.9	33.64
HORVU7Hr1G098080.1	Barley	nucleus	40.24	33.5
HORVU3Hr1G021110.1	Barley	nucleus	40.24	33.5
Os01t0300000-01	Rice	nucleus	40.85	33.33
Solyc11g006480.1.1	Tomato	nucleus	35.37	32.77
KXG32361	Sorghum	mitochondrion	43.29	32.42
Solyc08g078620.1.1	Tomato	mitochondrion	40.85	32.37
Solyc10g078200.1.1	Tomato	nucleus	39.63	31.71
Solyc12g042390.1.1	Tomato	cytosol	37.8	28.57
Solyc01g103460.2.1	Tomato	cytosol	36.59	28.17
Solyc12g094540.1.1	Tomato	cytosol	34.76	27.94
Solyc08g007350.1.1	Tomato	cytosol	39.63	27.66
Os01t0299700-01	Rice	cytosol, peroxisome	33.54	23.21
Solyc09g092340.2.1	Tomato	nucleus	29.27	16.0

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	UniProt:K4B198	PFAM:PF01612	PANTHER:PTHR13620
PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc01g100670.1	EnsemblPlants:Solyc01g100670.1.1
UniParc:UPI00027676DD	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:90655114..90655608

Molecular Weight (calculated)

18792.7 Da

IEP (calculated)

8.088

GRAVY (calculated)

-0.271

Length

164 amino acids

Sequence
(BLAST)

001: MLSKYSGKQT VVGLDNEWKP NFSRYTNNKL ATLQLCIDNT CLIVQLFYLD EIPQTLKKFL ANPNFTFVGV EVGEDILKLK NEYGLVCYNQ ADIRDVAKKK
101: WPCRYSRPGL KDLAYDICSL NMPKPKHVSM SNWEATELSV SQVEYACIDA YASFKIGQKL LMEN

Best Arabidopsis Sequence Match ( AT4G13870.1 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.