Factsheet for TraesCS3A01G116100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G118000.1	Wheat	nucleus, peroxisome, plastid	93.53	94.0
TraesCS3B01G135200.1	Wheat	nucleus, peroxisome, plastid	93.53	94.0
HORVU7Hr1G098080.1	Barley	nucleus	72.64	74.11
HORVU3Hr1G021110.1	Barley	nucleus	72.64	74.11
Os01t0300000-01	Rice	nucleus	72.14	72.14
Zm00001d009130_P001	Maize	nucleus	69.65	65.42
KXG32361	Sorghum	mitochondrion	68.66	63.01
Os01t0299700-01	Rice	cytosol, peroxisome	58.21	49.37
PGSC0003DMT400087534	Potato	cytosol, nucleus, plastid	34.83	44.3
VIT_14s0060g01000.t01	Wine grape	nucleus	33.33	42.95
Solyc01g100670.1.1	Tomato	cytosol	34.33	42.07
PGSC0003DMT400092627	Potato	nucleus	42.29	41.26
TraesCS7A01G302600.1	Wheat	cytosol	41.29	39.71
PGSC0003DMT400016348	Potato	nucleus	40.8	39.23
Solyc01g100680.1.1	Tomato	plastid	39.3	39.11
TraesCS3A01G239600.1	Wheat	cytosol	38.31	39.09
TraesCS3A01G239500.1	Wheat	nucleus	38.81	39.0
VIT_14s0060g00990.t01	Wine grape	nucleus	40.3	38.57
TraesCS5A01G007100.1	Wheat	cytosol	38.31	38.31
TraesCS4A01G026000.1	Wheat	cytosol	35.82	37.7
TraesCS3A01G278600.1	Wheat	cytosol	33.83	35.42
Solyc04g076930.1.1	Tomato	cytosol, nucleus, plastid	22.89	35.38
TraesCS6A01G390200.1	Wheat	nucleus	32.34	32.83
KRH26003	Soybean	nucleus	33.83	32.69
TraesCS1A01G315700.1	Wheat	mitochondrion	31.84	32.16
TraesCS2A01G565200.1	Wheat	cytosol	36.32	31.47
KRH63674	Soybean	cytosol	21.39	26.06
TraesCS2A01G011600.1	Wheat	nucleus	26.87	18.24
TraesCS2A01G262300.1	Wheat	cytosol, mitochondrion, nucleus	30.85	10.58

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408
GO:GO:0009987	GO:GO:0016787	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34
InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SUPFAM:SSF53098	EnsemblPlantsGene:TraesCS3A01G116100	EnsemblPlants:TraesCS3A01G116100.1	TIGR:cd06141
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:83774289..83774894

Molecular Weight (calculated)

21824.3 Da

IEP (calculated)

8.660

GRAVY (calculated)

-0.104

Length

201 amino acids

Sequence
(BLAST)

001: MATTRHTVPF GSARINTTVT SDTDAADEWV RRVRAANDPA GRGLIAGLDC KWKPNYSSWT TSKVAILQLC VGTSCLVLQM FYANRVPAAI RGLLGDPTVR
101: CVGIGVGEDA AKLADDYGLV CAAPVDLEAR CNEYLGIGGG LGRTRLGLKG YAREVLGLTT KKPRHVTMSN WERRQLDVAQ VQYACIDAYV SYKLGERLLD
201: N

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.