Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G625700.1 | Wheat | cytosol | 86.64 | 86.27 |
| TraesCS4A01G026000.1 | Wheat | cytosol | 63.36 | 76.96 |
| TraesCS5A01G007100.1 | Wheat | cytosol | 66.38 | 76.62 |
| TraesCS7A01G302600.1 | Wheat | cytosol | 67.67 | 75.12 |
| TraesCS3A01G239600.1 | Wheat | cytosol | 59.48 | 70.05 |
| Os01t0660800-01 | Rice | nucleus | 55.6 | 64.82 |
| Zm00001d011507_P001 | Maize | cytosol | 53.02 | 60.89 |
| EES03384 | Sorghum | nucleus | 52.16 | 59.9 |
| TraesCS3A01G239500.1 | Wheat | nucleus | 50.43 | 58.5 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 42.67 | 51.56 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 43.1 | 50.51 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 43.53 | 48.56 |
| Solyc10g078200.1.1 | Tomato | nucleus | 42.67 | 48.29 |
| PGSC0003DMT400093830 | Potato | cytosol | 42.24 | 47.8 |
| PGSC0003DMT400064032 | Potato | nucleus | 40.95 | 44.19 |
| Solyc01g103460.2.1 | Tomato | cytosol | 39.66 | 43.19 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 37.93 | 42.51 |
| Solyc12g094540.1.1 | Tomato | cytosol | 36.21 | 41.18 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 37.5 | 41.04 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 37.5 | 40.85 |
| KRH00115 | Soybean | nucleus | 37.5 | 40.85 |
| PGSC0003DMT400075613 | Potato | nucleus | 38.36 | 40.45 |
| Solyc11g006480.1.1 | Tomato | nucleus | 30.6 | 40.11 |
| PGSC0003DMT400036459 | Potato | extracellular | 37.07 | 39.81 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 39.66 | 39.48 |
| KRH00114 | Soybean | cytosol | 37.93 | 38.94 |
| KRH00116 | Soybean | cytosol | 35.34 | 38.86 |
| Solyc08g007350.1.1 | Tomato | cytosol | 39.22 | 38.72 |
| Solyc12g042390.1.1 | Tomato | cytosol | 36.21 | 38.71 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 31.03 | 37.89 |
| PGSC0003DMT400032554 | Potato | cytosol | 39.66 | 36.51 |
| TraesCS3A01G116100.1 | Wheat | mitochondrion, nucleus, plastid | 31.47 | 36.32 |
| KRH49255 | Soybean | nucleus | 35.78 | 34.87 |
| TraesCS1A01G315700.1 | Wheat | mitochondrion | 26.29 | 30.65 |
| KRH00112 | Soybean | nucleus | 26.29 | 30.5 |
| TraesCS2A01G011600.1 | Wheat | nucleus | 24.14 | 18.92 |
| TraesCS2A01G262300.1 | Wheat | cytosol, mitochondrion, nucleus | 28.45 | 11.26 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF34 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | EnsemblPlantsGene:TraesCS2A01G565200 | EnsemblPlants:TraesCS2A01G565200.1 |
| TIGR:cd06141 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:764913455..764914153
Molecular Weight (calculated)
26436.8 Da
IEP (calculated)
4.429
GRAVY (calculated)
-0.376
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTETFVTDV AFEDDVITTT VTSSGDAVVA WLRKIRYAYR WVYHKLIVGL DVEWRPSFGP GYNRAALLQL CVGRRCLIFQ LLHADYIPRS LESFLADPDF
101: RFVGVGVQDD ADRLRNDHDL VVNNTVDLRG LAADGMRRPW LRQAGLKDIT GAVMRANLEK PQRVRTGAWD AYRLSHEQIK YACIDAFVSF EVGRKLLTGD
201: YYCSSDDEEE EEGVEEEDGS YYSDEYGSSE DY
101: RFVGVGVQDD ADRLRNDHDL VVNNTVDLRG LAADGMRRPW LRQAGLKDIT GAVMRANLEK PQRVRTGAWD AYRLSHEQIK YACIDAFVSF EVGRKLLTGD
201: YYCSSDDEEE EEGVEEEDGS YYSDEYGSSE DY
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.