Factsheet for VIT_08s0040g00710.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03385	Sorghum	cytosol, nucleus, plastid	50.48	52.24
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	50.0	52.0
PGSC0003DMT400094103	Potato	mitochondrion	51.92	50.7
Solyc01g103460.2.1	Tomato	cytosol	51.92	50.7
PGSC0003DMT400064032	Potato	nucleus	51.44	49.77
TraesCS3D01G239900.1	Wheat	cytosol, nucleus, plastid	46.63	49.24
Os01t0737600-00	Rice	cytosol	49.04	49.04
TraesCS5A01G007100.1	Wheat	cytosol	47.12	48.76
TraesCS3B01G268100.1	Wheat	cytosol, nucleus, plastid	46.15	48.73
TraesCS3A01G239600.1	Wheat	cytosol	46.15	48.73
EES03384	Sorghum	nucleus	47.12	48.51
Zm00001d011507_P001	Maize	cytosol	47.12	48.51
Os01t0660800-01	Rice	nucleus	46.15	48.24
TraesCS4A01G026000.1	Wheat	cytosol	44.23	48.17
HORVU7Hr1G071770.1	Barley	cytosol	49.04	48.11
TraesCS3A01G278600.1	Wheat	cytosol	43.75	47.4
Solyc11g006480.1.1	Tomato	nucleus	39.9	46.89
TraesCS7A01G302600.1	Wheat	cytosol	47.12	46.89
EES01441	Sorghum	cytosol, nucleus, plastid	47.12	46.67
KRH49255	Soybean	nucleus	53.37	46.64
TraesCS3D01G278900.1	Wheat	nucleus	46.63	46.63
EES01442	Sorghum	nucleus	46.63	46.63
TraesCS3B01G312800.1	Wheat	nucleus	46.63	46.63
TraesCS7B01G202700.1	Wheat	cytosol	46.63	46.63
KRH49260	Soybean	cytosol, nucleus, peroxisome	46.63	45.75
KRH00116	Soybean	cytosol	46.15	45.5
TraesCS7D01G297900.1	Wheat	cytosol	40.87	45.45
KRH00114	Soybean	cytosol	48.56	44.69
Zm00001d043554_P001	Maize	cytosol	43.75	44.61
TraesCS3A01G239500.1	Wheat	nucleus	42.79	44.5
VIT_14s0060g01000.t01	Wine grape	nucleus	33.17	44.23
Os04t0225100-01	Rice	cytosol	44.23	43.6
TraesCS2A01G565200.1	Wheat	cytosol	48.56	43.53
EES01443	Sorghum	cytosol	42.31	43.35
KXG33324	Sorghum	cytosol	40.87	43.15
TraesCS3D01G239800.1	Wheat	nucleus	41.35	43.0
TraesCS2B01G625700.1	Wheat	cytosol	48.08	42.92
HORVU3Hr1G069990.1	Barley	nucleus	46.15	41.92
TraesCS6B01G430200.1	Wheat	cytosol	39.9	41.5
KRH00115	Soybean	nucleus	41.83	40.85
HORVU0Hr1G006750.1	Barley	nucleus	39.42	40.59
TraesCS6A01G390200.1	Wheat	nucleus	37.5	39.39
Os01t0737700-00	Rice	nucleus	44.23	39.32
OQU87276	Sorghum	nucleus	42.31	38.94
EES03381	Sorghum	nucleus	40.38	37.17
VIT_14s0060g00990.t01	Wine grape	nucleus	37.5	37.14
Os11t0222320-00	Rice	cytosol, nucleus	24.04	37.04
TraesCS3D01G239600.1	Wheat	cytosol	40.87	36.02
GSMUA_Achr1P12990_001	Banana	plastid	32.69	35.79
TraesCS3B01G267900.1	Wheat	cytosol	42.31	35.77
KRH00112	Soybean	nucleus	33.65	35.0
Zm00001d047288_P001	Maize	nucleus	25.0	25.74
Zm00001d036734_P001	Maize	nucleus	31.73	24.54
Os01t0660500-00	Rice	mitochondrion	42.79	22.76
Zm00001d011513_P001	Maize	plastid	44.23	21.1
VIT_05s0029g00410.t01	Wine grape	nucleus	25.0	17.28
Zm00001d022094_P001	Maize	nucleus	31.73	15.64
Zm00001d010107_P001	Maize	nucleus	31.73	6.41

Protein Annotations

EntrezGene:104880074	InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	EMBL:AM427923	ProteinID:CAN60287
ProteinID:CAN60287.1	ProteinID:CBI32833	ProteinID:CBI32833.3	UniProt:D7TQW3	EMBL:FN596008	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008408	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR036397	PFAM:PF01612
PANTHER:PTHR13620	PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	SMART:SM00474	SUPFAM:SSF53098
UniParc:UPI0001983C49	ArrayExpress:VIT_08s0040g00710	EnsemblPlantsGene:VIT_08s0040g00710	EnsemblPlants:VIT_08s0040g00710.t01	RefSeq:XP_010653650.1	SEG:seg

Description

No Description!

Coordinates

chr8:+:11650625..11651300

Molecular Weight (calculated)

23710.5 Da

IEP (calculated)

6.732

GRAVY (calculated)

-0.063

Length

208 amino acids

Sequence
(BLAST)

001: MAVAELERCR THELFRVAFH DDCIETLVTH VPHMVDSWIG DIEHIHRHRL HKLIVGLDIE WRPNNARYTN PVAILQLCVG RRCLIFQLLY APEIPTSLID
101: FLGDTDYTFV GVGIQADSQK LLNDHNLRVG NVVDLAVLAA RVLNTRELRN AGIKRLAREV LGREVEKPKH VARSRWDTDW LSDAQVHYAC VDAFVSFEVG
201: RCLNASAD

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.