CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043985_P001	Maize	cytosol, nucleus, plastid	76.12	76.5
EES03384	Sorghum	nucleus	57.21	56.93
EES01442	Sorghum	nucleus	55.72	53.85
TraesCS3A01G239500.1	Wheat	nucleus	51.24	51.5
EES01443	Sorghum	cytosol	51.74	51.23
TraesCS3D01G239800.1	Wheat	nucleus	50.75	51.0
VIT_08s0040g00710.t01	Wine grape	cytosol	52.24	50.48
EES01441	Sorghum	cytosol, nucleus, plastid	52.24	50.0
PGSC0003DMT400093830	Potato	cytosol	48.76	47.8
KXG33324	Sorghum	cytosol	46.27	47.21
Solyc10g078200.1.1	Tomato	nucleus	47.76	46.83
Solyc01g103460.2.1	Tomato	cytosol	43.28	40.85
Solyc08g007350.1.1	Tomato	cytosol	47.26	40.43
Solyc11g006480.1.1	Tomato	nucleus	35.32	40.11
PGSC0003DMT400064032	Potato	nucleus	42.79	40.0
PGSC0003DMT400094103	Potato	mitochondrion	42.29	39.91
EES03381	Sorghum	nucleus	44.78	39.82
Solyc08g078620.1.1	Tomato	mitochondrion	40.8	39.61
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	45.77	39.48
KRH00115	Soybean	nucleus	41.79	39.44
OQU87276	Sorghum	nucleus	44.28	39.38
KRH00114	Soybean	cytosol	44.28	39.38
KRH49260	Soybean	cytosol, nucleus, peroxisome	41.29	39.15
Solyc12g042390.1.1	Tomato	cytosol	41.29	38.25
PGSC0003DMT400075613	Potato	nucleus	41.79	38.18
Solyc12g094540.1.1	Tomato	cytosol	38.31	37.75
PGSC0003DMT400036459	Potato	extracellular	39.8	37.04
KRH00116	Soybean	cytosol	38.81	36.97
KXG32361	Sorghum	mitochondrion	39.8	36.53
PGSC0003DMT400032554	Potato	cytosol	45.27	36.11
GSMUA_Achr1P12990_001	Banana	plastid	33.83	35.79
KRH49255	Soybean	nucleus	41.79	35.29
Zm00001d036734_P001	Maize	nucleus	44.78	33.46
Zm00001d047288_P001	Maize	nucleus	31.84	31.68
KRH00112	Soybean	nucleus	30.85	31.0
EES02313	Sorghum	mitochondrion, plastid	34.33	28.51
OQU88309	Sorghum	mitochondrion	28.36	23.36
EES11779	Sorghum	nucleus	25.37	16.4
EER95744	Sorghum	nucleus	34.33	14.17

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:8060134	UniProt:C5XFW3	EnsemblPlants:EES03385
ProteinID:EES03385	ProteinID:EES03385.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00474	EnsemblPlantsGene:SORBI_3003G245700	SUPFAM:SSF53098	UniParc:UPI0001A85174	RefSeq:XP_002458265.1

Description

hypothetical protein

Coordinates

chr3:-:58474321..58475329

Molecular Weight (calculated)

22405.8 Da

IEP (calculated)

5.113

GRAVY (calculated)

-0.021

Length

201 amino acids

Sequence
(BLAST)

001: MAATRVYKVR FEEDLITTTV TASGADVESW LDEVLAVHRR RLHKLVVGLD VEWRPSFSRA YSKTAILQLC VGRRCLVFQI LRAGYVPIAL AEFLGDDSGY
101: TFVGVGVEAD AQRLCDDYGL EVGHTVDLAY LAAEKMERRD LRNAGLKGIA AAVMDAHVEK PQSVRIGPWD AYDLSDEQVK YATIDAFVSF EVGRRLLNGD
201: Y

Best Arabidopsis Sequence Match ( AT4G13870.1 )
(BLAST)

001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS

Arabidopsis Description

WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.