CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01442	Sorghum	nucleus	63.45	60.1
TraesCS3A01G278600.1	Wheat	cytosol	57.87	59.38
Os01t0737600-00	Rice	cytosol	62.44	59.13
TraesCS3D01G278900.1	Wheat	nucleus	61.93	58.65
TraesCS3B01G312800.1	Wheat	nucleus	61.93	58.65
EES01443	Sorghum	cytosol	58.38	56.65
EES01441	Sorghum	cytosol, nucleus, plastid	59.9	56.19
HORVU3Hr1G069990.1	Barley	nucleus	59.9	51.53
Os01t0737700-00	Rice	nucleus	59.39	50.0
EES03385	Sorghum	cytosol, nucleus, plastid	47.21	46.27
EES03384	Sorghum	nucleus	45.18	44.06
PGSC0003DMT400093830	Potato	cytosol	43.15	41.46
VIT_08s0040g00710.t01	Wine grape	cytosol	43.15	40.87
Solyc10g078200.1.1	Tomato	nucleus	41.12	39.51
OQU87276	Sorghum	nucleus	44.16	38.5
EES03381	Sorghum	nucleus	41.62	36.28
Solyc08g078620.1.1	Tomato	mitochondrion	38.07	36.23
PGSC0003DMT400094103	Potato	mitochondrion	38.07	35.21
KRH00116	Soybean	cytosol	37.56	35.07
KRH00114	Soybean	cytosol	39.59	34.51
Solyc11g006480.1.1	Tomato	nucleus	30.96	34.46
Solyc01g103460.2.1	Tomato	cytosol	37.06	34.27
KRH00115	Soybean	nucleus	37.06	34.27
Solyc12g042390.1.1	Tomato	cytosol	37.56	34.1
KRH49260	Soybean	cytosol, nucleus, peroxisome	35.53	33.02
PGSC0003DMT400075613	Potato	nucleus	36.55	32.73
PGSC0003DMT400064032	Potato	nucleus	35.53	32.56
Solyc12g094540.1.1	Tomato	cytosol	33.5	32.35
KRH49255	Soybean	nucleus	39.09	32.35
Solyc08g007350.1.1	Tomato	cytosol	38.07	31.91
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	37.56	31.76
KXG32361	Sorghum	mitochondrion	34.01	30.59
PGSC0003DMT400036459	Potato	extracellular	33.5	30.56
PGSC0003DMT400032554	Potato	cytosol	38.58	30.16
GSMUA_Achr1P12990_001	Banana	plastid	28.43	29.47
KRH00112	Soybean	nucleus	27.41	27.0
EES02313	Sorghum	mitochondrion, plastid	28.93	23.55
OQU88309	Sorghum	mitochondrion	23.86	19.26
EES11779	Sorghum	nucleus	23.86	15.11
EER95744	Sorghum	nucleus	30.46	12.32

Protein Annotations

EnsemblPlants:KXG33324	EnsemblPlantsGene:SORBI_3003G289300	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	PANTHER:PTHR13620	PANTHER:PTHR13620:SF34	ProteinID:KXG33324
ProteinID:KXG33324.1	SEG:seg	SUPFAM:SSF53098	UniParc:UPI00081AE7D4	UniProt:A0A1B6Q5X8	MapMan:35.2

Description

hypothetical protein

Coordinates

chr3:+:62197832..62198487

Molecular Weight (calculated)

22463.9 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.141

Length

197 amino acids

Sequence
(BLAST)

001: MATRIAIAHT NDGRYMVFFD DDSILTTLTD SGDVVDSWLD EIYRIHRRRL KRLVVGLDVE WRPSYSRYDA PPVAVLQMCV DHRCLVFQIL HADYLPDALF
101: DFLADDRLTF VGVGIHGDVA KLRAGSGTSG CAGPGCRRPA LVWEVMGVQM EKPYHVRRSP WDSRQLSYDQ LKYACADAFA SFEVGRRHIG DHIIRYI

Best Arabidopsis Sequence Match ( AT2G36110.1 )
(BLAST)

001: MARIRRRIQK RHIHENRYID FFGERLIVTV THTTSTIRRW IHSIRFFSRL RSSHPLVVGL DVQWTPGGSD PPPDILQLCV GNRCLIIQLS HCKRIPEVLR
101: SFLEDETITF VGVWNSQDQG KLERFRHQLE IWRLLDIRHY LPTRLLNSSF EKIVEECLGY KGVRKDKEIC MSNWGARSLS HDQIVQASDD VYVCCKLGVK
201: ECIWKERSNV KERIWKESSN VKEHIWKESS KLYFVGVCF

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.