CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0225100-01	Rice	cytosol	80.0	79.62
EES01443	Sorghum	cytosol	68.1	70.44
EES01442	Sorghum	nucleus	64.76	65.38
KXG33324	Sorghum	cytosol	56.19	59.9
EES03385	Sorghum	cytosol, nucleus, plastid	50.0	52.24
EES03384	Sorghum	nucleus	46.19	48.02
VIT_08s0040g00710.t01	Wine grape	cytosol	46.67	47.12
PGSC0003DMT400093830	Potato	cytosol	42.86	43.9
Solyc10g078200.1.1	Tomato	nucleus	41.43	42.44
Solyc08g078620.1.1	Tomato	mitochondrion	41.43	42.03
KRH00115	Soybean	nucleus	41.43	40.85
KRH00116	Soybean	cytosol	40.95	40.76
OQU87276	Sorghum	nucleus	43.81	40.71
KRH49260	Soybean	cytosol, nucleus, peroxisome	39.52	39.15
Solyc11g006480.1.1	Tomato	nucleus	32.86	38.98
Solyc01g103460.2.1	Tomato	cytosol	39.52	38.97
KRH00114	Soybean	cytosol	41.9	38.94
EES03381	Sorghum	nucleus	41.43	38.5
Solyc12g094540.1.1	Tomato	cytosol	37.14	38.24
PGSC0003DMT400094103	Potato	mitochondrion	38.57	38.03
Solyc08g007350.1.1	Tomato	cytosol	42.38	37.87
PGSC0003DMT400075613	Potato	nucleus	39.52	37.73
PGSC0003DMT400064032	Potato	nucleus	38.57	37.67
PGSC0003DMT400032474	Potato	cytosol, nucleus, vacuole	41.43	37.34
Solyc12g042390.1.1	Tomato	cytosol	37.14	35.94
KRH49255	Soybean	nucleus	40.48	35.71
PGSC0003DMT400036459	Potato	extracellular	36.19	35.19
KXG32361	Sorghum	mitochondrion	35.71	34.25
PGSC0003DMT400032554	Potato	cytosol	40.95	34.13
GSMUA_Achr1P12990_001	Banana	plastid	30.0	33.16
KRH00112	Soybean	nucleus	29.05	30.5
EES02313	Sorghum	mitochondrion, plastid	30.95	26.86
OQU88309	Sorghum	mitochondrion	25.71	22.13
EES11779	Sorghum	nucleus	26.19	17.68
EER95744	Sorghum	nucleus	33.81	14.58

Protein Annotations

InterPro:3'-5'_exonuclease_dom	Gene3D:3.30.420.10	MapMan:35.2	EntrezGene:8062153	UniProt:C5XJ62	EnsemblPlants:EES01441
ProteinID:EES01441	ProteinID:EES01441.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008408	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR036397	PFAM:PF01612	PANTHER:PTHR13620	PANTHER:PTHR13620:SF14	InterPro:RNaseH-like_sf
InterPro:RNaseH_sf	SMART:SM00474	EnsemblPlantsGene:SORBI_3003G289000	SUPFAM:SSF53098	UniParc:UPI0001A84923	RefSeq:XP_002456321.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:62189032..62190196

Molecular Weight (calculated)

23872.6 Da

IEP (calculated)

6.033

GRAVY (calculated)

-0.239

Length

210 amino acids

Sequence
(BLAST)

001: MATEIQGYCS DDDTYVVSFD EDCFEATLTK SGGEVESWLE ETYRIHRRCR HMLIVGLDVE WRPAAPVPGP VAVLQICVDR RCLVFQILRA DYVPDALSDF
101: LADRRFTFVG VGIRDDAAKL RDGYGLEVPR TVDLRRLAAR TLGKPDLRRA GLQRLVWEVL GVQMEKPHHV RVSAWDKRKL SKAQFKYACA DAFASMEVGQ
201: ELYTCHCGDE

Best Arabidopsis Sequence Match ( AT3G12410.1 )
(BLAST)

001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV

Arabidopsis Description

Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.