Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU87276 | Sorghum | nucleus | 63.27 | 63.27 |
| TraesCS3D01G239600.1 | Wheat | cytosol | 52.65 | 50.42 |
| TraesCS6A01G390200.1 | Wheat | nucleus | 43.81 | 50.0 |
| EES03384 | Sorghum | nucleus | 44.25 | 49.51 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 52.65 | 48.37 |
| EES03385 | Sorghum | cytosol, nucleus, plastid | 39.82 | 44.78 |
| EES01443 | Sorghum | cytosol | 39.38 | 43.84 |
| EES01442 | Sorghum | nucleus | 38.94 | 42.31 |
| KXG33324 | Sorghum | cytosol | 36.28 | 41.62 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 24.78 | 41.48 |
| EES01441 | Sorghum | cytosol, nucleus, plastid | 38.5 | 41.43 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 37.17 | 40.38 |
| KRH00116 | Soybean | cytosol | 37.61 | 40.28 |
| Solyc11g006480.1.1 | Tomato | nucleus | 31.42 | 40.11 |
| PGSC0003DMT400093830 | Potato | cytosol | 36.28 | 40.0 |
| KRH00115 | Soybean | nucleus | 37.17 | 39.44 |
| Solyc10g078200.1.1 | Tomato | nucleus | 35.4 | 39.02 |
| Solyc01g103460.2.1 | Tomato | cytosol | 36.73 | 38.97 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 36.73 | 38.97 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 36.28 | 38.68 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 34.51 | 37.68 |
| PGSC0003DMT400064032 | Potato | nucleus | 35.84 | 37.67 |
| KRH00114 | Soybean | cytosol | 37.61 | 37.61 |
| KRH49255 | Soybean | nucleus | 39.38 | 37.4 |
| PGSC0003DMT400075613 | Potato | nucleus | 36.28 | 37.27 |
| Solyc12g094540.1.1 | Tomato | cytosol | 31.86 | 35.29 |
| KXG32361 | Sorghum | mitochondrion | 34.07 | 35.16 |
| Solyc12g042390.1.1 | Tomato | cytosol | 31.86 | 33.18 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 33.63 | 32.62 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 26.99 | 32.11 |
| Solyc08g007350.1.1 | Tomato | cytosol | 32.74 | 31.49 |
| PGSC0003DMT400036459 | Potato | extracellular | 30.09 | 31.48 |
| KRH00112 | Soybean | nucleus | 26.55 | 30.0 |
| PGSC0003DMT400032554 | Potato | cytosol | 31.42 | 28.17 |
| Os01t0660500-00 | Rice | mitochondrion | 44.69 | 25.83 |
| EES02313 | Sorghum | mitochondrion, plastid | 24.78 | 23.14 |
| OQU88309 | Sorghum | mitochondrion | 21.24 | 19.67 |
| EES11779 | Sorghum | nucleus | 23.01 | 16.72 |
| EER95744 | Sorghum | nucleus | 29.2 | 13.55 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | EntrezGene:8061810 | UniProt:C5XFV9 | EnsemblPlants:EES03381 |
| ProteinID:EES03381 | ProteinID:EES03381.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0090305 | InterPro:IPR036397 | ProteinID:OQU87273.1 | ProteinID:OQU87274.1 | PFAM:PF01612 | PANTHER:PTHR13620 |
| PANTHER:PTHR13620:SF32 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | EnsemblPlantsGene:SORBI_3003G245300 | SUPFAM:SSF53098 | unigene:Sbi.5552 |
| UniParc:UPI0001A85170 | RefSeq:XP_002458261.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:58430977..58433031
Molecular Weight (calculated)
24912.1 Da
IEP (calculated)
6.595
GRAVY (calculated)
0.005
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTGTYDTDV VMDDGTVIRT TITSSGDAVN LFLREVRKQA GHGHPPHIVG LDTEWRIVHD EDGRRKNRMA VLQLCVGHRC LVYQIFHADY VPDALRDFLA
101: CPDHRFLGVA VDGDVKRLSE DCGLVVADAA DLRHVAAEVL ARPELRTASL KTLTREVMGV LIDKPKSVTM SKWDARRLSV KQVQYACVDA FVSYEIGRLL
201: LTGQCAEHAA TGEMISPFIA SVVPVA
101: CPDHRFLGVA VDGDVKRLSE DCGLVVADAA DLRHVAAEVL ARPELRTASL KTLTREVMGV LIDKPKSVTM SKWDARRLSV KQVQYACVDA FVSYEIGRLL
201: LTGQCAEHAA TGEMISPFIA SVVPVA
001: MSSSIVKIGI DSIKTTVTEK ERDINRLVKT FLSNKNNRKK IIGLDTERVQ KGRKLNKTVL LQLCDGDNCL IVQLPDEDED EGEGEDDNLP LPLFNFLNLP
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
101: EFTFVGIGIN KTMMRLESEF GLTCKNVVEI GPATWNLTNM TTDVKFRISA IVSTERPSNA VLEDWEKFVL NKNQIKLAAS NAYFAFGIGN ILLDVQILS
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9LK79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.