Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G239600.1 | Wheat | cytosol | 89.02 | 92.8 |
| EES03381 | Sorghum | nucleus | 48.37 | 52.65 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 42.28 | 52.0 |
| OQU87276 | Sorghum | nucleus | 46.34 | 50.44 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 38.62 | 48.22 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 39.84 | 47.12 |
| TraesCS3B01G312800.1 | Wheat | nucleus | 35.77 | 42.31 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 35.77 | 42.31 |
| Os11t0222320-00 | Rice | cytosol, nucleus | 23.17 | 42.22 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 38.21 | 40.34 |
| Solyc01g103460.2.1 | Tomato | cytosol | 34.55 | 39.91 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 34.55 | 39.91 |
| PGSC0003DMT400093830 | Potato | cytosol | 32.52 | 39.02 |
| Solyc11g006480.1.1 | Tomato | nucleus | 27.64 | 38.42 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 32.11 | 38.16 |
| Solyc10g078200.1.1 | Tomato | nucleus | 31.3 | 37.56 |
| TraesCS3B01G135200.1 | Wheat | nucleus, peroxisome, plastid | 30.49 | 37.5 |
| PGSC0003DMT400064032 | Potato | nucleus | 32.52 | 37.21 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 31.71 | 36.79 |
| KRH00116 | Soybean | cytosol | 31.3 | 36.49 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 34.55 | 36.48 |
| KRH00114 | Soybean | cytosol | 33.33 | 36.28 |
| KRH00115 | Soybean | nucleus | 31.3 | 36.15 |
| KRH49255 | Soybean | nucleus | 34.55 | 35.71 |
| Solyc08g007350.1.1 | Tomato | cytosol | 33.74 | 35.32 |
| PGSC0003DMT400036459 | Potato | extracellular | 30.89 | 35.19 |
| Solyc12g094540.1.1 | Tomato | cytosol | 28.46 | 34.31 |
| PGSC0003DMT400075613 | Potato | nucleus | 30.49 | 34.09 |
| Solyc12g042390.1.1 | Tomato | cytosol | 29.27 | 33.18 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 25.61 | 33.16 |
| PGSC0003DMT400032554 | Potato | cytosol | 33.74 | 32.94 |
| KRH00112 | Soybean | nucleus | 26.02 | 32.0 |
| Zm00001d011513_P001 | Maize | plastid | 48.78 | 27.52 |
| Os01t0660500-00 | Rice | mitochondrion | 42.28 | 26.6 |
| TraesCS1B01G327900.1 | Wheat | mitochondrion | 20.73 | 25.63 |
| TraesCS2B01G010000.1 | Wheat | nucleus | 20.73 | 17.29 |
| TraesCS2B01G279800.1 | Wheat | mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF32 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SMART:SM00474 | SUPFAM:SSF53098 | EnsemblPlantsGene:TraesCS3B01G267900 | EnsemblPlants:TraesCS3B01G267900.1 |
| TIGR:cd06141 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:431152263..431153003
Molecular Weight (calculated)
27592.3 Da
IEP (calculated)
5.937
GRAVY (calculated)
-0.081
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MAITYHAPPQ PTEQPVAPRH RSRVDADVVM DDGTVIRTTV TSSACDVLLF LRELQELFCK EIHDHNSLSK VQEQQGLEEV QQHLHCLVVG LDTEWHQISE
101: TGGKPRYQIA VLQLCVGDRC LVYQIFHADY IPAELAAFLA NPDFCFVAVG AGGDVKRLHD DCNLEVAHTM DLPQVAAVVL GRPELRQAGL KTLAREVMDT
201: LIEKPKKVTM SKWAAPHLSW EQVRYACIDA FVSFDVGRRL LCEPRV
101: TGGKPRYQIA VLQLCVGDRC LVYQIFHADY IPAELAAFLA NPDFCFVAVG AGGDVKRLHD DCNLEVAHTM DLPQVAAVVL GRPELRQAGL KTLAREVMDT
201: LIEKPKKVTM SKWAAPHLSW EQVRYACIDA FVSFDVGRRL LCEPRV
001: MASPTIRTVA SYNTHLEYSV DFFGDEFIVT VTWDSSVISR WIRNVLFNNR FSSHPLVVGV GVQWTPFSYY SDPRPNNYYA DPPPIRYYSD NPADILQLCV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
101: GNRCLIIQLG YCDQVPNNLR SFLADPETTF VGVWNGQDAG KLARCCHQLE IGELLDIRRY VTDSWGRSMR RSSFEEIVEE CMGYQGVMLD PEISMSDWTA
201: YDLDLDQILQ ASLDAYVCHQ LGVWTRLWEV
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LHG7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.