Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G278900.1 | Wheat | nucleus | 99.52 | 99.52 |
| TraesCS3A01G278600.1 | Wheat | cytosol | 88.94 | 96.35 |
| HORVU3Hr1G069990.1 | Barley | nucleus | 89.9 | 81.66 |
| Os01t0737600-00 | Rice | cytosol | 72.6 | 72.6 |
| EES01442 | Sorghum | nucleus | 70.67 | 70.67 |
| Os01t0737700-00 | Rice | nucleus | 70.19 | 62.39 |
| KXG33324 | Sorghum | cytosol | 58.65 | 61.93 |
| TraesCS3B01G268100.1 | Wheat | cytosol, nucleus, plastid | 50.0 | 52.79 |
| TraesCS7B01G202700.1 | Wheat | cytosol | 51.92 | 51.92 |
| PGSC0003DMT400093830 | Potato | cytosol | 47.6 | 48.29 |
| Solyc10g078200.1.1 | Tomato | nucleus | 46.15 | 46.83 |
| TraesCS2B01G625700.1 | Wheat | cytosol | 52.4 | 46.78 |
| VIT_08s0040g00710.t01 | Wine grape | cytosol | 46.63 | 46.63 |
| TraesCS6B01G430200.1 | Wheat | cytosol | 41.83 | 43.5 |
| Solyc08g078620.1.1 | Tomato | mitochondrion | 40.87 | 41.06 |
| KRH00115 | Soybean | nucleus | 41.83 | 40.85 |
| KRH00114 | Soybean | cytosol | 44.23 | 40.71 |
| Solyc11g006480.1.1 | Tomato | nucleus | 34.13 | 40.11 |
| KRH49255 | Soybean | nucleus | 45.67 | 39.92 |
| Solyc01g103460.2.1 | Tomato | cytosol | 40.87 | 39.91 |
| KRH00116 | Soybean | cytosol | 39.9 | 39.34 |
| KRH49260 | Soybean | cytosol, nucleus, peroxisome | 39.9 | 39.15 |
| PGSC0003DMT400094103 | Potato | mitochondrion | 39.9 | 38.97 |
| PGSC0003DMT400064032 | Potato | nucleus | 39.9 | 38.6 |
| Solyc08g007350.1.1 | Tomato | cytosol | 43.27 | 38.3 |
| GSMUA_Achr1P12990_001 | Banana | plastid | 34.62 | 37.89 |
| Solyc12g042390.1.1 | Tomato | cytosol | 39.42 | 37.79 |
| PGSC0003DMT400036459 | Potato | extracellular | 38.94 | 37.5 |
| TraesCS3B01G135200.1 | Wheat | nucleus, peroxisome, plastid | 36.06 | 37.5 |
| PGSC0003DMT400032474 | Potato | cytosol, nucleus, vacuole | 41.35 | 36.91 |
| PGSC0003DMT400075613 | Potato | nucleus | 38.94 | 36.82 |
| Solyc12g094540.1.1 | Tomato | cytosol | 35.58 | 36.27 |
| TraesCS3B01G267900.1 | Wheat | cytosol | 42.31 | 35.77 |
| PGSC0003DMT400032554 | Potato | cytosol | 42.31 | 34.92 |
| KRH00112 | Soybean | nucleus | 31.25 | 32.5 |
| TraesCS1B01G327900.1 | Wheat | mitochondrion | 30.29 | 31.66 |
| TraesCS2B01G010000.1 | Wheat | nucleus | 25.96 | 18.31 |
| TraesCS2B01G279800.1 | Wheat | mitochondrion, plastid | 0.48 | 0.33 |
Protein Annotations
| InterPro:3'-5'_exonuclease_dom | Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 |
| GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036397 | PFAM:PF01612 | PANTHER:PTHR13620 | PANTHER:PTHR13620:SF14 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | SUPFAM:SSF53098 | EnsemblPlantsGene:TraesCS3B01G312800 | EnsemblPlants:TraesCS3B01G312800.1 | TIGR:cd06141 |
Description
No Description!
Coordinates
chr3B:-:502646338..502646964
Molecular Weight (calculated)
23334.0 Da
IEP (calculated)
6.945
GRAVY (calculated)
-0.004
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSMVTDFG DGHCIVAFDQ DHVHTTLTSS GGVVDEWLDL IYRIHRRRLE RLVVGLDVEW RPSFRGLPPG PVALLQLCVG RRCLVFQILR ADYVPDSLFD
101: FLADGRFTFV GVGVYGDAQK LSAHYGLAVT NTVDLRYLAA NTLGKPALRH TGLQGLVWQV MGVWPEKPHH VRVSAWDAPR LTRDQLQYAC ADAFASFEVG
201: RRLYDGDY
101: FLADGRFTFV GVGVYGDAQK LSAHYGLAVT NTVDLRYLAA NTLGKPALRH TGLQGLVWQV MGVWPEKPHH VRVSAWDAPR LTRDQLQYAC ADAFASFEVG
201: RRLYDGDY
001: MSSSNWIDDA FTEEELLAID AIEASYNFSR SSSSSSSAAP TVQATTSVHG HEEDPNQIPN NIRRQLPRSI TSSTSYKRFP LSRCRARNFP AMRFGGRILY
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
101: SKTATEVDKR AMQLIKVLDT KRDESGIAFV GLDIEWRPSF RKGVLPGKVA TVQICVDSNY CDVMHIFHSG IPQSLQHLIE DSTLVKVGIG IDGDSVKLFH
201: DYGVSIKDVE DLSDLANQKI GGDKKWGLAS LTETLVCKEL LKPNRIRLGN WEFYPLSKQQ LQYAATDAYA SWHLYKDLPD AVSGS
Arabidopsis Description
WEXWerner Syndrome-like exonuclease [Source:UniProtKB/Swiss-Prot;Acc:Q84LH3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.